Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02162 ATGATCGGCTTTAGAAAACCCAGATTAACAACATTCACATTTTTCGATGTCAACCTTAAACCCTCACTAAACCCTAGATTTCACACCACAAAACCCAAACTTCCCTCAAAATCCACCATCAAAGAAGCCCAATCCGCATTACTAGAATATCTTCATTCCACAAGAAGCTTGCAGTTCTTAGACGCAGACAACATGTGCAAAAACTCACCTTTTTTCCTTCAAAATCTCGTCCAGGAAACCCTAAAAAACGATAAATCCTTAAACACCAAGCGCTCAATTTCTCGCTACCTGCGTTACCACCCTATCAACGAATTCGAACCCTTTTTCGAGAGTTTGGGTTTGAAGCCTTCTGAATACGCACCTTTTCTTCCCCGCGGCATGATTTTTCTTTACGATGATACCCTTTTGATGGAAAATTATCACATTTTGTGTAACTATGGTGTTCCTCGATCCAAAATGTGGAAGTTTTTCAAACTAGCGCCTCAAGTTTTTCGCTTTGAAAATGGGGTTTTGAATTCGAAGCTTACGGCTTATGAAAACTTGGGTATTGGATCTTCCATTTTAGTGGATGCTATTACTGTTAGTCCATGCCTTTTGGTTGGTGATGTTAATGTTGAATTTGTTAAGGTTGTGGAGAAGTTGAAGAGTATTGTTTCCAAATGTGGTGATGGTGACAGTTGTTGGATAGAGTGGCATTTTTTGGATGAGGCTTCTTGCAATTGGGGCTTCATGCTTGAGGTTTTGTGTTTGCTTTCAAATGTTGATTTTAGTGAGGAACAGTTGGCTGAGATTATTCGTCGTCGTCCTTGTGTTGTTTTCGAGGAATCGGGTGGTACTACACTCTCCATGATTGGCTTTTTGATGAAATTTGGATTGTCTGTGAACCAAATTGCTCTCGTGTTTCTCGAGTTTCCGCAGATTCCGATGGTCAATTTTTTCGCCAACTTGAGGCGGTGCTTTCAGTTGCTTACACAAATTGAGATGGAAGCTGCAGAGATTGGAAAGATTTTTCAGTCTCACACATTATTTGTAGGTTCCTTTACTCTCAAGACAACAAAGAGTTTGCTCGGTTGCTTGAATGTTGGGAAGCGGCGTCTCTGTAAAATGGTGCAGGATAATCCTCATGTAATGAAAAATTGGGTTCTTGGAAGAAAAGTTCAGCCTTTAGTTAGCACAAAGGAAGCGGAAGAAGAGAAATCGAGGGCGCGGAAGATGGAGTTCTTGACGAGCTTAGGATATGTGGAAAACACGAAACAAATGAATTCTGCGATTAAAGTTTTCAGAGGTAAGGGAGCTGAGCTTCAGAAGAGATTTGATTTTATTGTTAAAGCTGGTTTGACGCGTGAGGATGTTTGTAGAATGATTAGAGTTTCGCCTCAGATTCTTAATCAGAATACAGATAGGGTCAAGATGAAAATTGAGTATCTTGTTAAGGAAGGATATTCTGTATCAGATTTAGTGACTTTCCCATCTTATCTTTCATATACACCTATAAGATTTAAGCTTAGGATGTCAATGTATAACTGGCTCAAAGAACAAGGAGCTGCAGAGCAAGGGCTTGCTTTGAGCACCATAATTGCATGCACAGATAAAGTATTCATACAACAGTATGTAAATCGTCATCCATCTGGCCTTCAAGTTTGGGAAGATTTGCAGAAAGAAATTCAATCTGAAGACGAATGA 1683 0.3981 MIGFRKPRLTTFTFFDVNLKPSLNPRFHTTKPKLPSKSTIKEAQSALLEYLHSTRSLQFLDADNMCKNSPFFLQNLVQETLKNDKSLNTKRSISRYLRYHPINEFEPFFESLGLKPSEYAPFLPRGMIFLYDDTLLMENYHILCNYGVPRSKMWKFFKLAPQVFRFENGVLNSKLTAYENLGIGSSILVDAITVSPCLLVGDVNVEFVKVVEKLKSIVSKCGDGDSCWIEWHFLDEASCNWGFMLEVLCLLSNVDFSEEQLAEIIRRRPCVVFEESGGTTLSMIGFLMKFGLSVNQIALVFLEFPQIPMVNFFANLRRCFQLLTQIEMEAAEIGKIFQSHTLFVGSFTLKTTKSLLGCLNVGKRRLCKMVQDNPHVMKNWVLGRKVQPLVSTKEAEEEKSRARKMEFLTSLGYVENTKQMNSAIKVFRGKGAELQKRFDFIVKAGLTREDVCRMIRVSPQILNQNTDRVKMKIEYLVKEGYSVSDLVTFPSYLSYTPIRFKLRMSMYNWLKEQGAAEQGLALSTIIACTDKVFIQQYVNRHPSGLQVWEDLQKEIQSEDE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02162 560 Gene3D Transcription termination factor 3, mitochondrial 280 551 IPR038538 -
Car03g02162 560 Gene3D Transcription termination factor 3, mitochondrial 66 222 IPR038538 -
Car03g02162 560 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Car03g02162 560 SMART mt_12 483 516 IPR003690 GO:0003690|GO:0006355
Car03g02162 560 SMART mt_12 154 184 IPR003690 GO:0003690|GO:0006355
Car03g02162 560 SMART mt_12 452 482 IPR003690 GO:0003690|GO:0006355
Car03g02162 560 Pfam mTERF 250 397 IPR003690 GO:0003690|GO:0006355
Car03g02162 560 Pfam mTERF 398 533 IPR003690 GO:0003690|GO:0006355
Car03g02162 560 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 552 - -
Car03g02162 560 PANTHER CGI-12 PROTEIN-RELATED 24 552 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02162 Car-Chr3 67797037 67799460 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Car03g02162 mTERF 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02162 - - lja:Lj1g3v4317450.1 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02162 03 67797037 67799460 Car03g02162 03 67797037 67799460 ECH