Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02160 ATGGGTTCAAGCAACTCTTCTTCTGAAGACTCATCTCTCAATGGCTTGAAATTCGGCCAAACTATCTATTTCGAAGATGTTGCAGCTATTCCTCCCCCTCCTCCCTCCATTGCTACTTCTTCAAAGAAAGGAGGAAGATGTGCTTCTCTTCAACAATCTCAACCACCTAGGTGTCAAGTTGAAGGATGTCAAGTAGATCTGACTGATGCTAAACCTTATTATTCTAGACACAAAGTATGTGCCATGCACTCTAAATCCCCTACTGTCACTGTTGCTGCTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTGTTGAGTTTGATCAAGGAAAAAGGAGTTGCCGCAGGCGACTAGCTGGTCATAATGAGCGTCGCAGAAAGCCTCCACCAAGCTCTCTCTTAACCTCGCGTTTCGCCAGACTTTCTTCGTCTGTTTTTGGTAACAGTGGTAGAGGTAGTAGCTTCTTGATGGAATTTAATTCACACGCGAAACTTAGTATGAGAAATCCACTTCCATCACCTAGATCGTCTGAGCTATTTCCCGGAAATCAAACCACGACACTTGGATGGCATTGGCCGGGCAACTCAGAGTCTCCATCTGACAACCTTTTCTTGCAAGGATCAGTCGGCGGGACAAGCTTCCCTGGTACTCGGCATCCTCCCGAGGAAAGTTACACTGGAGTCACAGATTCAAGCTGTGCTCGCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACACAGAACCAAGTCTCAGATTGAATAACATGCTGAATTTCAATGAGACACCCATGACACAACTTGCTACATCTTCTCACAGTGTAGCCATCCATCAACTTCCGAACAATTCGTTCTGTTACAAGGACATTGATCCTGGAAACATTTCGCACGAGGTTGTTCCTGATCTTGGTCTCGGTCATATGTCGCAGCCTCTCGATAGCCAACTTTCTGGTGAGCTTGATCTGTCTCAGCAGGGAAGGAGGCATTATATGGATCCAGAACATTCTAGGGCTTATGAATCTTCTCAGTGGTCACTTTAA 1053 0.452 MGSSNSSSEDSSLNGLKFGQTIYFEDVAAIPPPPPSIATSSKKGGRCASLQQSQPPRCQVEGCQVDLTDAKPYYSRHKVCAMHSKSPTVTVAALQQRFCQQCSRFHQLVEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRFARLSSSVFGNSGRGSSFLMEFNSHAKLSMRNPLPSPRSSELFPGNQTTTLGWHWPGNSESPSDNLFLQGSVGGTSFPGTRHPPEESYTGVTDSSCARSLLSNQTWGSRNTEPSLRLNNMLNFNETPMTQLATSSHSVAIHQLPNNSFCYKDIDPGNISHEVVPDLGLGHMSQPLDSQLSGELDLSQQGRRHYMDPEHSRAYESSQWSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02160 350 SUPERFAMILY SBT domain 56 137 IPR036893 GO:0003677|GO:0005634
Car03g02160 350 MobiDBLite consensus disorder prediction 171 217 - -
Car03g02160 350 MobiDBLite consensus disorder prediction 171 233 - -
Car03g02160 350 Pfam SBP domain 58 131 IPR004333 GO:0003677
Car03g02160 350 MobiDBLite consensus disorder prediction 329 350 - -
Car03g02160 350 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Car03g02160 350 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Car03g02160 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 3 347 - -
Car03g02160 350 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 347 IPR044817 GO:0003677
Car03g02160 350 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02160 Car-Chr3 67783792 67787452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02160 16 350 SBP-box Gene Family AT2G42200 43.902 1.33e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car03g02160 SBP 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02160 - - gmx:100780949 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02160 03 67783792 67787452 Car03g02160 03 67783792 67787452 ECH
Car03g02160 03 67783792 67787452 Car04g02169 04 29614548 29620276 PCT