Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02142 ATGGATTTGAATTCGCGTTATCAACACAACCAACCCAATTCTGGCTTGCTTCGTTTTCGCTCAAATTTCAAACAACCTAAAGCTGCTGCTGCTAATGATGAACCAGATAGCTTACTCTTGAGATTCACTAATACTGCCAATACTTCATCTACCTTTCCAGAATTCTTCCCCCATAATAAAGGTCACAACGATCCTTCATCATTATCTCTCCTACACACCAATTCTCATCAAGGTTATACTACTTCCTCTGCTTCCCATTTCTCCAACTTCATCTCCTTTCGGAATGcgtatgacactatgaaaggtgttgaaaactatgatgaagtgaatgacagTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAAAAGTCCTTCTTCCTTGAGAATGTTATCACAAAACTCCAAAATGGGGAATGTGGGCATTGCCACAATTAGCCGAGATGATCGGAGACAACAAGATGGCAATGACGATGCTCAGTATTATGGTCATAAATTCGTTTATGATTCTAATGATCAGAATGTAGAGCTAGGAAATCAAATTGATACATTATCGCATAACTTGAGTTTGCAAAGAAAGTCATCAGAGATGTTTGTTGTGGAGAATTTGCTTCAGTTTCCAGATTCTGTTCCCAGCAGTATTAGAGCAAAGAGAGGCTTTGCAACACATCCTCGAAGCGTCGCCGAAAGGGTGAGAAGAACTCGGATAAGCGATCGAATGAGAAAGTTGCAAGAACTTGTTCCAAACATTGACAAGCAAACTAGCACATCAGACATGTTGGATTTGGCGGTAGAGTACATTAATGATCTTCAAAAAGAATTAAAGACTGCGAGTGAAAAACGAGCTAAATGTAGATGCATAAGAATGAAGATGCATAAGAATTAA 912 0.3684 MDLNSRYQHNQPNSGLLRFRSNFKQPKAAAANDEPDSLLLRFTNTANTSSTFPEFFPHNKGHNDPSSLSLLHTNSHQGYTTSSASHFSNFISFRNAYDTMKGVENYDEVNDSDGELTLSMNILNNQIGFSPKSPSSLRMLSQNSKMGNVGIATISRDDRRQQDGNDDAQYYGHKFVYDSNDQNVELGNQIDTLSHNLSLQRKSSEMFVVENLLQFPDSVPSSIRAKRGFATHPRSVAERVRRTRISDRMRKLQELVPNIDKQTSTSDMLDLAVEYINDLQKELKTASEKRAKCRCIRMKMHKN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02142 303 SMART finulus 235 285 IPR011598 GO:0046983
Car03g02142 303 Pfam Helix-loop-helix DNA-binding domain 235 280 IPR011598 GO:0046983
Car03g02142 303 PANTHER TRANSCRIPTION FACTOR BHLH130 80 299 - -
Car03g02142 303 Coils Coil 269 296 - -
Car03g02142 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Car03g02142 303 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 299 - -
Car03g02142 303 Gene3D - 231 301 IPR036638 GO:0046983
Car03g02142 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 295 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02142 Car-Chr3 67652741 67655181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02142 54 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 44.082 1.78e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02142 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02142 - - mtr:MTR_7g092540 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02142 03 67652741 67655181 Car04g02192 04 30271697 30275359 PCT