Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02129 ATGGCTGACCACCCTTACTCTAATAATCTTTTCTCTTCATCAAGTTTCTTCCATTTTCCATCTTCAAATCCTTCTTCTCCTTTTCAATTTCATCACCATCacaacaacaacaacaacaacaacaacaGCACCTTTTTCCACTACCATCATATTTCTTCTTCACCACCTTCTCCTCCTCTAAGAGAAGAACTTCCTCTCTTAAGCCTAATAACAGCAAAACAAGAAGAATATGAAGAACTTTCTTCATGCACTCCCATGGATTTAGAACAAAGGGTGATTAATCTTTCAAaagaagaagaagaggaagaagaagaagaagaagaaAATGATATAACTACAACtagtagtagtagtaatagtGTTACAGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCCTCAAACTCCTCATCAGAAATCACAGATAAACAACAACATGGAGGAGATGCTGAAGATTCTTCTTCAGGTTTCATGCTTAACAGAATTAACAAAGGACAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACTCAATTTTCTTGCCCTGTttgctgcaaaactttcaacagatataacaacatgcagATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGGCCTGAATCTCTAAGAGGCACACAACCAACAGGAATGCTAAGGCTACCTTGTTACTGTTGTGCACAAGGATGCAGAAACAACATTGATCATCCAAGAGCAAAGCCTCTTAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAACATGGAATTAAGCCTTTCATGTGTAGAAAATGCAGCAAAGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGTAAGCTATGGTATTGTATCTGTGGTTCTGATTTCAAACATAAAAGGTCTCTTAAAGATCATATCAAAGCTTTTGGAAATGGACATGCTGCTTATGGATTTGATGGATTTGAAGAAGAAGATGAACCAGCTTCTGAAGTGGAGCAAGATAATGAATGA 1050 0.339 MADHPYSNNLFSSSSFFHFPSSNPSSPFQFHHHHNNNNNNNNSTFFHYHHISSSPPSPPLREELPLLSLITAKQEEYEELSSCTPMDLEQRVINLSKEEEEEEEEEEENDITTTSSSSNSVTVALHIGLPNPSAAEMASVLSSNSSSEITDKQQHGGDAEDSSSGFMLNRINKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAQGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGFDGFEEEDEPASEVEQDNE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02129 349 Gene3D Classic Zinc Finger 190 213 - -
Car03g02129 349 PANTHER ZINC FINGER PROTEIN WIP2 30 349 IPR043584 GO:0003700|GO:0010468
Car03g02129 349 Gene3D Classic Zinc Finger 252 328 - -
Car03g02129 349 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 30 349 - -
Car03g02129 349 Coils Coil 86 117 - -
Car03g02129 349 MobiDBLite consensus disorder prediction 97 119 - -
Car03g02129 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Car03g02129 349 SUPERFAMILY beta-beta-alpha zinc fingers 257 295 IPR036236 -
Car03g02129 349 SMART c2h2final6 275 295 IPR013087 -
Car03g02129 349 SMART c2h2final6 238 270 IPR013087 -
Car03g02129 349 SMART c2h2final6 191 213 IPR013087 -
Car03g02129 349 MobiDBLite consensus disorder prediction 137 164 - -
Car03g02129 349 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Car03g02129 349 MobiDBLite consensus disorder prediction 137 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02129 Car-Chr3 67526349 67528983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02129 5 349 C2H2 Transcription Factor Family AT3G57670 60.519 4.65e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g02129 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02129 03 67526349 67528983 Car04g02211 04 31010999 31014326 PCT