Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02124 ATGGATAATTGCAAGAAATCTCCCTTGAAACCATGGAAGAAAGGCCCTACTAGAGGGAAAGGTGGTCCTCAAAATGCATCGTGTGAGTATCGAGGCGTTCGTCAGAGAACTTGGGGAAAATGGGTCGCCGAGATAAGAGAGCCGAAGAAGAGAACTAGACTATGGCTTGGTTCTTTTGCCACTGCTGAAGAAGCTGCTATGGCTTATGATGAGGCTGCCAGGAGACTCTACGGACCAGACGCATACCTTAACCTTCCGCACCTACAACCACACTCAAATTCGCGTATCAAAACTGGAAAGTTCAAGTGGTTGCCTTCTAAGAATTTCATTTCAATGTTTCCATCTTGTGGATTACTTAATGTTAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGTTTAAGCAGAATGCAGTTGCAACAAGTCAATCATCACTTTCTAGCTCATCTAATGATCCAAAGGCGGAAGAAATTCAGAATGTTGACGGCAAGAAGAATCATGCAGAAAATCCTATAATGGAAAAAGATACTCAAGCATCATCACCAAACAAGATGGTTGGAGATTTTCAGGAGAAACCACAGATAGACCTCCATGAGTTTCTTCAACAGATGGGAATACTGAAAGACGATACTAACTCGGAACAAACTACTGATAGCTCAGGAAGTTCAACAGTGCATGAAGCTGTGTCAAGAGATGAGAATGATCAATTGGGAATATTTTCTGACATGAGTATTAATTGGGAGGCGTTGATTGAGATGCATGGAATTGCAGGTACTCAGGAATCAGAAGCCACTCAGCTTGATGGGTATGACCTGACTGACCAGCTTAATTTCTCAACTTCCATTTGGAATTTTTAA 867 0.4187 MDNCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPHSNSRIKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVATSQSSLSSSSNDPKAEEIQNVDGKKNHAENPIMEKDTQASSPNKMVGDFQEKPQIDLHEFLQQMGILKDDTNSEQTTDSSGSSTVHEAVSRDENDQLGIFSDMSINWEALIEMHGIAGTQESEATQLDGYDLTDQLNFSTSIWNF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02124 288 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Car03g02124 288 MobiDBLite consensus disorder prediction 145 159 - -
Car03g02124 288 MobiDBLite consensus disorder prediction 214 233 - -
Car03g02124 288 MobiDBLite consensus disorder prediction 214 230 - -
Car03g02124 288 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Car03g02124 288 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Car03g02124 288 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Car03g02124 288 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Car03g02124 288 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Car03g02124 288 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Car03g02124 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 285 - -
Car03g02124 288 MobiDBLite consensus disorder prediction 145 173 - -
Car03g02124 288 MobiDBLite consensus disorder prediction 1 27 - -
Car03g02124 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 285 - -
Car03g02124 288 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02124 Car-Chr3 67488940 67489941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02124 5 288 AP2-EREBP Transcription Factor Family AT3G57600 51.568 5.66e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g02124 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02124 - - gmx:100801311 442.195