Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02120 ATGTGCTGTGAGTTGGAGGGGTTAAAGCCTGCACCGTCTCCATCTCTATCTCCGATTTTGACACGCACTTCTCAATTAAGTAACCACACCATGAATCACCTAACTGTCGGCACTGAAGATTCTTTTGCGAGCTTGCTTGAGCTTGCTGCTAATAATGATGTTGAAGGGTTCAAACGATTGATTGAGTATGATCCTTCATCCGTAGATGAGGTTGGATTATGGTACGGCCGTCGTAAGGGATCGAAAAAGATGGTCAATGAGCAAAGGACGCCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTATGAAAATGATTATTTCTCTATCTGATGTACACATCAACAGGCCTTGTGGCCTTGACAAGAGCACCGCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCTGAAAATGCTGTTGTGGCTGTGAAGCTTCTTCTGGCAGCAGGGGCTGATCCGAATGCCGTGGATGCCAACGGGCATCGTCCATTAGATGTTATTGTTTTTCCTCCTAAGCTTGAATTTGTGAAGAACAGTCTTGAAGAGCTTCTTCAAACTGACGATCCTAGTGCTGGCTGTAATCTTAGGGTGATCACAACATCGTTTAATACGTATTCTCCTCCTTTGTCAGCTTCACCCGAGAACGGGTCTCCTTCTCCACCGGATCTCCTGTTGAAGTTAAAGTCAATTGATGTCCCTATTTCTCCTGCTGCATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCTGACATTAAAAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCCGGCCTTGTTCGCGTGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAACGCCCGGAGACGGGACCCGCGAAAGTATCACTACAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGAGGGGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTCCATCCTGCACAATATAGAACCCGTCTCTGCAAGGATGGGACAAATTGTGCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTGTATGTTTCAACTGGTTCTGCCGTTCCCTCACCTCGGTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCCGGCTCCCCTTCTTCGATGTCTGTCATGTCTCCGTCACCATTCACTCCACCCATGTCACCTTCTGGCAATGGCATTTCTCACTCTTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTGCATCTTCCGGGAAGTAATCTTCAGTCCAGTCGATTGAGATCTTCACTCAATGCTAGAGATATTCATATGGATGATTTTGACTTGTTATCTGATTATGATCAACAGCAACAGCTCATTAACGAGTTGTCTTGTCTCTCTCCACATACTATGAATTCTAACAGTCTTAGCCGCTCTGGTCGAATGAAGCCCTTGACTCCATCAAATCTTGACGATCTTTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCCGATCCTGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAGAACATGTTGGCACCTGTGAATACAAATTTTTCTTCTAAAAATGTTGAGCATCATTTATTGCAGGCAGCTTCTTTTGGGGTTCAGCCATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATCTCTCCAATGAGCTCTAGGATGTCGATGCTGGCACAACGTGAGAAGCACCAACAATTTCGCAGTCTAAGCTTCCGGGAGCACGGCTCCAACTCTATGGCTGCAGCAGCTACCGGCGCAGTCAATTCTTGGTCAAAATGGGAATCTCCCAACGGTAAGTTGGATTGGGCTCACAATGCAGATGAAGTAGGTAAGCTCCGCAGGTCATCTTCATTTGAGCTCGGAAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAATCGCTTGTCAAAGAATCTCCAACTGAAATTAAAGAGAAATTGGCAACTTCTATCTCAGGTGTTACACCAGCTGGATCCTCTGGTGAGGGATCGAATATGAGCACACAAATGGAGTCTGTTGATCATGCTGCTGTATTGGGAACATGGCTTGAACAGATTCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2310 0.4312 MCCELEGLKPAPSPSLSPILTRTSQLSNHTMNHLTVGTEDSFASLLELAANNDVEGFKRLIEYDPSSVDEVGLWYGRRKGSKKMVNEQRTPLMVAATYGSIDIMKMIISLSDVHINRPCGLDKSTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAENAVVAVKLLLAAGADPNAVDANGHRPLDVIVFPPKLEFVKNSLEELLQTDDPSAGCNLRVITTSFNTYSPPLSASPENGSPSPPDLLLKLKSIDVPISPAASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSGNGISHSSVAWPQPNIPALHLPGSNLQSSRLRSSLNARDIHMDDFDLLSDYDQQQQLINELSCLSPHTMNSNSLSRSGRMKPLTPSNLDDLFSAESSSPRYADPVFSPTHKSAVFNQFQQQQNMLAPVNTNFSSKNVEHHLLQAASFGVQPSGRMSPRNVEPISPMSSRMSMLAQREKHQQFRSLSFREHGSNSMAAAATGAVNSWSKWESPNGKLDWAHNADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATSISGVTPAGSSGEGSNMSTQMESVDHAAVLGTWLEQIQLDHLVAQQN 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02120 769 PANTHER UNKEMPT FAMILY MEMBER 31 128 IPR045234 -
Car03g02120 769 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 368 IPR000571 GO:0046872
Car03g02120 769 SUPERFAMILY Ankyrin repeat 45 211 IPR036770 -
Car03g02120 769 Coils Coil 127 127 - -
Car03g02120 769 MobiDBLite consensus disorder prediction 443 466 - -
Car03g02120 769 PANTHER UNKEMPT FAMILY MEMBER 176 766 IPR045234 -
Car03g02120 769 Coils Coil 177 180 - -
Car03g02120 769 MobiDBLite consensus disorder prediction 526 546 - -
Car03g02120 769 ProSiteProfiles Zinc finger C3H1-type profile. 348 370 IPR000571 GO:0046872
Car03g02120 769 Gene3D - 344 406 - -
Car03g02120 769 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 31 128 - -
Car03g02120 769 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 176 766 - -
Car03g02120 769 Gene3D - 39 211 IPR036770 -
Car03g02120 769 SMART c3hfinal6 378 401 IPR000571 GO:0046872
Car03g02120 769 SMART c3hfinal6 343 369 IPR000571 GO:0046872
Car03g02120 769 SMART ANK_2a 87 115 IPR002110 GO:0005515
Car03g02120 769 SMART ANK_2a 40 70 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02120 Car-Chr3 67456065 67459029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02120 39 762 C2H2 Transcription Factor Family AT5G12850 48.728 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car03g02120 zf-CCCH 7.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02120 - - ccaj:109796653 1118.22