Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02112 ATGGGAACACCCGAATTCCCAGATCTAGGCAAGCATTGTGCTGTTTCTCATTGCAGACTCATCGATTTCTTACCCTTCACATGTGATCGTTGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATAAAACATCATTGTACAAAACCCAACAAAAATGATATCACAGTTGTTATATGTCCACTTTGTGCCAAAGGGGTTCGCCTAATTCCTGATAAAGATCCAAATATAGTTTGGGAGAATCATGTCAACACAGATTGTGACCCATCAAATTATGACAAAGTCACAAAGAAGAAAAAGTGTCCTGCCCCAGGATGCAGAGAGACCCTAGTATTCTCAAACACAATCAAGTGTAGGGATTGTGAGGTAGAACATTGTTTGAAGCATAGGTTTGGAGCTGATCACAAATGTTCTGGTCCCAAAAAATTGGAAACAAGTTTTTCATTTATGAGTAGTCTTTTGAATAATAGGAGTAATAGTAAAGAAGATTCAAAACCCAATTCATCTAAATGGACTTCAAGCCTTATTGACTTGGCTTCTAAATTGGGTGGTGAAATTAACCAAGCATGGCAAAGTTTTCAAGTGGAGGAGAAGTGTCCTCAATGTAGTGCAAAGTTTTCATCAGTTACTAGTTTGGTGGATCATGTGAAAAAAGTTCATCAAGTAAAGAAGGTGCCAATTTCTGCTTGTCCTAAGTGTAGTAAAGGTTTTTTGGACCCTGCTTCTCTTGTGAAGCATGTTGATAGGGATCATGGTGGTAGTTCTTGA 768 0.3828 MGTPEFPDLGKHCAVSHCRLIDFLPFTCDRCNQVYCLEHRSYIKHHCTKPNKNDITVVICPLCAKGVRLIPDKDPNIVWENHVNTDCDPSNYDKVTKKKKCPAPGCRETLVFSNTIKCRDCEVEHCLKHRFGADHKCSGPKKLETSFSFMSSLLNNRSNSKEDSKPNSSKWTSSLIDLASKLGGEINQAWQSFQVEEKCPQCSAKFSSVTSLVDHVKKVHQVKKVPISACPKCSKGFLDPASLVKHVDRDHGGSS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02112 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Car03g02112 255 Gene3D - 81 160 IPR035896 -
Car03g02112 255 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Car03g02112 255 SUPERFAMILY beta-beta-alpha zinc fingers 198 247 IPR036236 -
Car03g02112 255 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Car03g02112 255 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Car03g02112 255 ProSitePatterns Zinc finger C2H2 type domain signature. 230 251 IPR013087 -
Car03g02112 255 SMART c2h2final6 228 251 IPR013087 -
Car03g02112 255 SMART c2h2final6 197 220 IPR013087 -
Car03g02112 255 ProSitePatterns Zinc finger C2H2 type domain signature. 199 220 IPR013087 -
Car03g02112 255 Gene3D Classic Zinc Finger 179 255 - -
Car03g02112 255 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 193 255 - -
Car03g02112 255 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 184 - -
Car03g02112 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 225 IPR013087 -
Car03g02112 255 SUPERFAMILY AN1-like Zinc finger 93 145 IPR035896 -
Car03g02112 255 Gene3D - 2 60 IPR035896 -
Car03g02112 255 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Car03g02112 255 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Car03g02112 255 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 184 - -
Car03g02112 255 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 193 255 - -
Car03g02112 255 Pfam C2H2-type zinc finger 198 220 - -
Car03g02112 255 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Car03g02112 255 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02112 Car-Chr3 67363896 67365535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02112 1 255 C2H2 Transcription Factor Family AT2G41835 56.429 2.76e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g02112 zf-AN1 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02112 - - cam:101511743 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02112 03 67363896 67365535 Car04g02240 04 32333998 32337589 PCT