Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02077 ATGGAGGAGCGATACCGATCAATGCTTGGAGACCATATTAAGAAGTACAAAAGGAGGTTTAAGGGTACCTTGATTAGTCCTGGCTCAAATCAGGTTGCTGATTCATTTATGAAAAGTAACAATGGATTAAAAGTTCACAAGCTAGGGAATGAGCGCAGGAGAGGATCGCATGCTTCAGAGACTACATCCAAATGGATTAATGATTCCAATGCTCAGAAACCAGGGAACTTCCTTGATACTGATAGGGTTATGTATGAACCTGCATCTGTGGATATTGCAGCTGGTATAACTTATAAGATTCCTCCAGTTTATGATAAGTTGGCTGCAATGGTGAACCTTCCAAGCTTCTCAGATATCCACATTGAGGATTTTTACCTAAAGGGTACATTGGATTTAGGCTCCTTGGCTGAAATGACGGAATCTGATAAAAGGTTTAGAAATAGAAAACGAGCAGACATGGGGGAAACTGTATCCCAATATGAATCACTTCAAGCACGTCTAAAGGACACACCAGCTTCTAATTCAAATCACAAGTTCAGTCTGAAAATATCTGATGCTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCTGGAAGCATAAAGCGATCTATTTTATCAGAGGGTGGTATATTGCAGGTTTATCATGTGAAGGTTTTGGAGAAAGGCGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAGAGAAAGACCCTGCTTTAATAGAGAAGGAGGAAATGGAGAAATTGGGAAAGATTTGGGTAAATATTGTAAGAAGAGATCTACCAAGACATCATAGGAATTTTACTACTTTTCATCGAAAGCAGATTGTTGACGCCAAGAGGGCCTCAGATAACTGTCAAAGAGAGGTTAAAACGAAAGTAAGTAGATCACTTAAATGGACGAAGACTGCTAGCATGCGCACCCGAAAACTAGCTAGAGACATGTTACTATTCTGGAAACGGATAGATAAGGAGATGGTAGAAGTGAAGAGAAGGGAGGAAAAAGAGGCTGCTGAAGCTTTGAGGCGTGAGCAGGAGCTTCGAGAAGCAAAGAGGCAGAAGCAAAGGCTAAATTTTCTTATACAACAGACTGAGCTGTATAGTCACTTTATGCAGAACAAGTCAATATCTTCAGACGCTCTATCCATGGCAGATGAAAATACAAATGATCAAAATGTATTGATCAATTCTTCAGATGCTGGTCTTAATGAGGAGGAAGATCCCGAAGAGGCTGAATTGAAGAAGGAAGCTTTGATGGTTGCTCAAGAAGCAGTTACTAAGCAGAGAAGGTTAACAAGTGCTTTTGATACTGAGTGCTTGAGGCTGCGCCAGGCTGGTGAATCCGATTCACTTCCACTAGAAGTTTCTGGAGAAAATCATATTGATTTGCAAACCCCTTCCACCATGCCTGTGGCATCGACAGTTCGGACACCTGAGTTATTTAATGGTTGTCTCAAAGAGTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGgtattcttgctgatgagatgggacttggaaagaccATTCAGGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTTTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTTAGGAAAATTATGAACCCAAAGGATCTTTATCGCAGGGATGCTAAATTTCACATTCTCATCACAAGTTACCAGCTGTTAGTCGCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGACGAAGCCCAGGCAATTAAAAGTTCGAACAGTATAAGATGGAAGACTCTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCCGTTCAGAACAATATGGCCGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAATCATGAGCAGTTTAACGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAACACCAACTTAGTCGATTGCATTCAATTATAAAGCCTTTCATGCTGCGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGCAAAACTGAAGTTACAGTGCACTGCAAGTTAAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTGGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATCCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAACTCTCTCCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGATATCATGCGGAGTTCTGAAACTCTTAGCTCAGCTGTTGGTCATGATGTCTGTAGAGAATCTTTTCAGAAATATTTTAATATTTTTAGACCAGATAATGTTTATCAATCTGTCTTCTCCGAAGATATGCATTTTAAAAGTGGAATCTTTGGCTTTACCCATTTGATGGATTTGTCTCCCCAAGAGGTGACATTTCTGGTCACTGGTTCTTTTATGGAGCGACTATTATTTTCAATGATGAGACAGGGACAAAAGTTCATTAATGAAGTTGTAAACTTTCTTACGGAGACCATAGATGATGATCTGGAATGTAGTTACCTTGAAAAAGGAAAAGTGAGAACTGTAACACAAATGTTATTGGTTCCATCGAGATCTGAGACTAAGTTTCTTCAAAACAGATTGCCCACTGGACCCAGCCACACTCCTATTGAGGCCTTGGTTGTCCCACATCAGGAGAGGCTTTTATCAAATGCAAGGCTTCTTCACTCAGCTTACACATATATCCCACAATGTAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGGAACTTCTGCTATAAAATGATTGAAGAACTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGCACGTCTGAATTTAATGGGCCTCGAAAGCCAGATGGTCCCCATCATTTAATTCAAGAGATCGACTCTGAACAACCTGTTTGTAAACCTGCTCTTCAGTTAACTCACAGTATTTTTGGGTCTTCTCCACCTATGCAAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTGCGAGCAGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCATCTTCAATTCAGGACCGTAGAGACATGGTCAGAGACTTTCAGCGTAGGTCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCGGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGACTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTAATGTCTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTAAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGGGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGGAGCAGAAATTTAAAAATATCCCTGTCCAGGTAAGGGATAAGCAAAAGAAAAAACAACCTATGAAGGGTATTTTGTTAAATGAAGAAGGTGATGCATCTCTGGAAGATCTCTCAAACTCTGTAACCCAGGGTACAACAGATTATGTTCTTTCTGTAGACCCAGAGGGATCAAATTCCAATAATAAAAAGAGAAAAGCTGTCTCAAAAGGCGAGTGA 4044 0.4031 MEERYRSMLGDHIKKYKRRFKGTLISPGSNQVADSFMKSNNGLKVHKLGNERRRGSHASETTSKWINDSNAQKPGNFLDTDRVMYEPASVDIAAGITYKIPPVYDKLAAMVNLPSFSDIHIEDFYLKGTLDLGSLAEMTESDKRFRNRKRADMGETVSQYESLQARLKDTPASNSNHKFSLKISDADLNSSIPEGAAGSIKRSILSEGGILQVYHVKVLEKGDTYEIIERSLPKKQKVEKDPALIEKEEMEKLGKIWVNIVRRDLPRHHRNFTTFHRKQIVDAKRASDNCQREVKTKVSRSLKWTKTASMRTRKLARDMLLFWKRIDKEMVEVKRREEKEAAEALRREQELREAKRQKQRLNFLIQQTELYSHFMQNKSISSDALSMADENTNDQNVLINSSDAGLNEEEDPEEAELKKEALMVAQEAVTKQRRLTSAFDTECLRLRQAGESDSLPLEVSGENHIDLQTPSTMPVASTVRTPELFNGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKIMNPKDLYRRDAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDNHEQFNEWFSKGIENHAEHGGTLNEHQLSRLHSIIKPFMLRRVKKDVISELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELLDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYEIPKLVYQDIMRSSETLSSAVGHDVCRESFQKYFNIFRPDNVYQSVFSEDMHFKSGIFGFTHLMDLSPQEVTFLVTGSFMERLLFSMMRQGQKFINEVVNFLTETIDDDLECSYLEKGKVRTVTQMLLVPSRSETKFLQNRLPTGPSHTPIEALVVPHQERLLSNARLLHSAYTYIPQCRAPPIGAHCSDRNFCYKMIEELHDPWVKRLFVGFARTSEFNGPRKPDGPHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSSIQDRRDMVRDFQRRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVNVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKFKNIPVQVRDKQKKKQPMKGILLNEEGDASLEDLSNSVTQGTTDYVLSVDPEGSNSNNKKRKAVSKGE 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02077 1347 ProSiteProfiles DBINO domain profile. 256 381 IPR020838 GO:0003677
Car03g02077 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 719 1274 IPR027417 -
Car03g02077 1347 MobiDBLite consensus disorder prediction 50 73 - -
Car03g02077 1347 Pfam DNA-binding domain 251 379 IPR020838 GO:0003677
Car03g02077 1347 MobiDBLite consensus disorder prediction 1321 1347 - -
Car03g02077 1347 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 501 672 IPR014001 -
Car03g02077 1347 Gene3D - 1061 1319 IPR027417 -
Car03g02077 1347 Coils Coil 328 367 - -
Car03g02077 1347 SMART ultradead3 485 680 IPR014001 -
Car03g02077 1347 PANTHER HELICASE SRCAP-RELATED 2 1322 - -
Car03g02077 1347 CDD SF2_C_SNF 1095 1227 - -
Car03g02077 1347 Pfam SNF2-related domain 504 791 IPR000330 GO:0005524|GO:0140658
Car03g02077 1347 PANTHER CHROMATIN-REMODELING ATPASE INO80 2 1322 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Car03g02077 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 717 IPR027417 -
Car03g02077 1347 Gene3D - 462 741 IPR038718 -
Car03g02077 1347 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1257 IPR001650 -
Car03g02077 1347 SMART helicmild6 1133 1216 IPR001650 -
Car03g02077 1347 Pfam Helicase conserved C-terminal domain 1107 1216 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02077 Car-Chr3 67022753 67034150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02077 509 801 RAD5 or RAD16-like Gene Family AT5G22750 28.169 7.79e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g02077 SNF2_N 5.5e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02077 K11665 - gmx:100780615 2259.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02077 03 67022753 67034150 Car03g02077 03 67022753 67034150 ECH