Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02054 ATGGTTGCATTTTGCTCTCCTCAATTATCATATTCAAACATGGGTTGGCTCTTAGAGGAGGTAGAGGCAGAGTCCTTATTATTAAGCCATAAGAAGAACTATGTATCATTAGATTACTCATTACCGCATCAATTCTCTTCACAAAAGCAACATGTTGAGATTGAAAGAACATCACCATCACCATCACCTAACCTTGTAGTGAAGAAGCTTAACCACAATGCTAGTGAACGTGATAGACGCAAGAAGATCAATAGCTTGATTTCTTCACTTCGTTCACTTCTTCCCGGGGAAGATCATACGAAAAAAATGAGCATTCCGGTAACAATTTCGAGAGTGTTAAAATACATACCGGAATTACAAAAGCAAGTGGAAGGACTAATTAAGCAAAAAGAAGAGCTTCTATCAAGAATTTCACGGCAAGAATATAAAGTGAACAAAGAATCACAAAAGAAAATTCCAAATTACAATTCTTCTTTTGTAGTTTCAACAAGTAGGCTTAATGATACTGAGCTTGCTATTCATATTTCGTCTTATGAGGCCCATAAGATTCCACTATCTGAGATCTTGTTGTGTTTAGAAGATAATGGGCTTTTTCTATTAAATTCTTCTTCTTCTAAAACTTTTGGAGGAAGGCTCTTCTATAACTTGCATTTTCAGGTGACGAAAACTCAAATATTAGAGTCTGATGTTCTAATTCAGAAGCTTTTGTCAATATACGAGAAGCAGCGAAGTAATCAATTTAGGTTGGGAACTAGTGTTAGATAA 765 0.3542 MVAFCSPQLSYSNMGWLLEEVEAESLLLSHKKNYVSLDYSLPHQFSSQKQHVEIERTSPSPSPNLVVKKLNHNASERDRRKKINSLISSLRSLLPGEDHTKKMSIPVTISRVLKYIPELQKQVEGLIKQKEELLSRISRQEYKVNKESQKKIPNYNSSFVVSTSRLNDTELAIHISSYEAHKIPLSEILLCLEDNGLFLLNSSSSKTFGGRLFYNLHFQVTKTQILESDVLIQKLLSIYEKQRSNQFRLGTSVR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02054 254 Pfam Helix-loop-helix DNA-binding domain 68 120 IPR011598 GO:0046983
Car03g02054 254 SMART finulus 73 125 IPR011598 GO:0046983
Car03g02054 254 Coils Coil 116 136 - -
Car03g02054 254 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 241 IPR015660 GO:0003700|GO:0006357
Car03g02054 254 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 241 - -
Car03g02054 254 Gene3D - 64 151 IPR036638 GO:0046983
Car03g02054 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 119 IPR011598 GO:0046983
Car03g02054 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02054 Car-Chr3 66762502 66764530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02054 39 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 45.894 5.40e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02054 HLH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02054 - - gmx:100803424 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02054 03 66762502 66764530 Car03g02054 03 66762502 66764530 ECH