Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02023 ATGCCTTACCTAGTCCGAGAGAATCTCTTCATCAGCAACATCAACGATGCTGCTGAGATTCTCCAAAACGGCACCGTTCACAACAACAACAACATCACACACATACTCTCCGTTCTCAGCTCCGCTTCCATTTCCTTCTTCTCCGAATGGCGTTCCACCTTCTCCATCCCCGTCAAAGAGATCTCCAAACTCCACGTCACCGACCTCCCCTCCGCCTCCAAGTTCGCTCTCTCGCCGGACAAACTCCTCTACTCGCTCGAGTACGCCGGTAAAGACCTCAAGCTCGTCAGAATGGCAATTCCTCTTAAGGATACAGAGAACGAGAATTTGTTGGATTACCTTCAAGTTTGCATCGATTTCATTGATCGTAGTAGGAAAGAAGGTTCCGTTTTGGTTCACTGTTTCGCTGGTGTTTCTAGAAGTGCGGCGATTATTACGGCTTATTTGATGAGAAGCGAAAATCTGTCACAAGAAGATGCCCTTGAATCTTTAAGACAGAGCTGTGAATTTGTTTGCCCCAATGATGGTTTTCTTGAGCAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCAATCTAGCTCTATATACAAGCGCTTTCGTCTCAAAATACTCGGTGAGAATCATTTCTCAGGGTTGAGGATAGATAGTTCTAAACTTGGTGCAGATCCTGGCGTGCCTGTTGAATCTTCTTCAGAGGTGGACGAAGCTACTAAAGTAAAAAGTAATAGTAGCCCTACATATCGCTGTAAGAAGTGCCGTCGCATTGTTGCATTGCAAGAACATGTTGTAGATCATATTCCTGGTGAGGGTGAGACATCCTTTGGTTGGCAGAAGCGGAGAAGTGGCAATCCTTTTAACAAGTCTAATGAATCTGAGTGTTCTTCCATATTTATTGAGCCTCTACGATGGATGAAAGCTGTTGAGGAAGGCGCTTTGGAGGGAAAGCTGTCCTGTGCTCATTGCGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAATGCAGCTGTGGAAGCTGGATAACCCCAGCTTTTCAACTTCACAAAAGTCGGGTAGATATAAGCCCTGTGTAA 1080 0.4546 MPYLVRENLFISNINDAAEILQNGTVHNNNNITHILSVLSSASISFFSEWRSTFSIPVKEISKLHVTDLPSASKFALSPDKLLYSLEYAGKDLKLVRMAIPLKDTENENLLDYLQVCIDFIDRSRKEGSVLVHCFAGVSRSAAIITAYLMRSENLSQEDALESLRQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSSIYKRFRLKILGENHFSGLRIDSSKLGADPGVPVESSSEVDEATKVKSNSSPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWQKRRSGNPFNKSNESECSSIFIEPLRWMKAVEEGALEGKLSCAHCDARLGYFNWAGIQCSCGSWITPAFQLHKSRVDISPV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02023 359 Gene3D Protein tyrosine phosphatase superfamily 4 207 IPR029021 -
Car03g02023 359 CDD DSP_DUSP12 4 192 - -
Car03g02023 359 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 111 166 IPR000387 GO:0016311|GO:0016791
Car03g02023 359 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 190 IPR020422 GO:0006470|GO:0008138
Car03g02023 359 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 190 IPR029021 -
Car03g02023 359 PIRSF DUSP12 3 51 IPR016278 GO:0006470|GO:0008138
Car03g02023 359 PIRSF DUSP12 85 359 IPR016278 GO:0006470|GO:0008138
Car03g02023 359 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 355 - -
Car03g02023 359 Pfam Dual specificity phosphatase, catalytic domain 94 186 IPR000340 GO:0008138|GO:0016311
Car03g02023 359 ProSitePatterns Tyrosine specific protein phosphatases active site. 132 142 IPR016130 GO:0016311|GO:0016791
Car03g02023 359 SMART dsp_5 1 187 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02023 Car-Chr3 66424584 66428228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02023 5 186 Protein tyrosine phosphatase (PTP) family AT3G06110 26.776 3.08e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02023 K14819 - gmx:100776877 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02023 03 66424584 66428228 Car03g02023 03 66424584 66428228 ECH