Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02020 ATGCTTCACCAACATATTCATCACTTTGAGTTTGACATGGAAAACTCCCAACTCTTCCAATTCCTTGCTGCCAACAACCCCTCATTCTTTGACTACTCCCCATCTAACACTACCATGCACCAAAGTTTCTCTACTTCATTAGAAGTTTCTGAAATTACGGATACACCCTCGCAGCAACAAAGAGCTCTGGCTGCTATGAAGAACCATAAGGAAGCTGAGAAGAGAAGGAGGGAGAGAATCAATTCACATCTTGACCATCTTCGCACTCTTCTCCCTTGCAATTCCAAGACAGACAAGGCTTCTCTACTTGCAAAAGTAGTTCAACGAGTGAAAGAGCTAAAACAACAAACTTCCGAAATCACTAAACTAGAAACCGTTCCATCAGAAACCGACGAGATAACCGTTCTCTCAACCGGCGGCGACTACACCGGCGACACCAGACTCATTTTCAAAGCCTCATTATGCTGCGAGGATCGCTCCGATCTAATACCGGATCTCGTCGATATCCTCAAGTCTCTTCACTTGAAAACTCTAAAAGCTGAAATGGCTACACTTGGTGGAAGAACGCGTAACGTTCTTGTGGTTGCTGCTGATCATAAAGAACATAGCATTGAATCGATTCATTTCCTTCAGAACTCGTTGAGGTCTTTAGTGGATAGATCGACTAGTTGTAATGATAGGTCGAAACGACGTCGTGGGTTGGATCGAAGAATGATGCATTAA 723 0.4371 MLHQHIHHFEFDMENSQLFQFLAANNPSFFDYSPSNTTMHQSFSTSLEVSEITDTPSQQQRALAAMKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITKLETVPSETDEITVLSTGGDYTGDTRLIFKASLCCEDRSDLIPDLVDILKSLHLKTLKAEMATLGGRTRNVLVVAADHKEHSIESIHFLQNSLRSLVDRSTSCNDRSKRRRGLDRRMMH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02020 240 MobiDBLite consensus disorder prediction 222 240 - -
Car03g02020 240 SMART finulus 70 119 IPR011598 GO:0046983
Car03g02020 240 Gene3D - 59 125 IPR036638 GO:0046983
Car03g02020 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Car03g02020 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 123 IPR036638 GO:0046983
Car03g02020 240 PANTHER TRANSCRIPTION FACTOR BHLH30 14 239 IPR045847 GO:0003700|GO:0006355
Car03g02020 240 CDD bHLH_AtAIG1_like 61 135 - -
Car03g02020 240 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 14 239 - -
Car03g02020 240 MobiDBLite consensus disorder prediction 221 240 - -
Car03g02020 240 CDD ACT_UUR-ACR-like 153 215 - -
Car03g02020 240 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02020 Car-Chr3 66366511 66367668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02020 18 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 60.731 6.01e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g02020 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02020 - K22484 gmx:100794930 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02020 03 66366511 66367668 Car03g02020 03 66366511 66367668 ECH