Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02013 ATGTACTCACAAGAAGAACCTTACTCCCAATCAGATTCCCAAACCTACCTTGCCGGTTTCGTAATGGCTAACATAGTCGGCCTTAAATACTACTCCGGCACAATTAGCGGCCGCGAAATGGTCGGCCTTGTCCGCGAACCACTCAATCCATACGATACTAACGCCATCAGAGTTCTCAACACTCAGTCTCTTCAAGTCGGTCACATTGAACGCCCCGTCGCCGCCGTTCTTTCACCTCTCATCGACGCTCAACTCATCATCGTTGAAGCCATCGTTCAAACCACCGCAAACTCTCGCTTCAGTAATAACAAATTCCGTATCCCTTGTCAGATTCATATCTTCGCTCATATATCTTGTTTTGATGCTGTTCATGACGCTTTTAATGATTCACCTGTtcatttcatttcgcattctgatccttcttttactctttctcattcCGTCGCCGTTAAAGAAACACGCGCCGATAACACTGCCACGAAAACCACCGACACAACTACCTCCAATAATAACCTAGACCAAATCTTCAAACTCGTTCGTCAAAATTTAAACCTAGCAGAGAAAAACCGAATCGCCGAACCGTTAAACCCTCCCTCTAACATAATCAAATCAGAGCTTCTTCAACATCAAAAAGAAGCATTAGCATGGCTTTTTCGCCGCGAAAATTCTGAGGATTTACCTCCGTTTTGGGAAGAGAAAGAGGGAAATTTCGTCAATGTGTTGACGAATTATCAAACAAACACGAGACCGGAGCCTCTCCGAGGAGGGatattcgccgactgtatgggattagggaagactttaacaTTGCTTTCATTGATTGCTTTTGATAAAATGCAAATGAAAAGTGGAAAGAAAAGAAGTAGGAGTAGTGTTGTAGAGACAAATGGTACATTGATTGTGTGTCCTCCTTCTGTTATTTCGACTTGGATAACTCAATTGGAAGAGCATACGAATCGTGGAGCATTGAAGGCTTACATGTATTATGGTGATAGAAGGACTAAAGATGTTGAGGAATTGAGAAAATATGATATTGTGTTGACTACTTATGCTACTTTGGGAATTGAGTTGCGGTGGCCGGATACTGCGGTGAAGAAATTGGGGTGGAGGAGAATTGTTTTGGACGAAGCACATACGATTAAGAATGTCAATGCTGGTCAGAGTCAGGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACTGGAACACCTATTCAGAATGGTTCTTATGATTTGTTTTCACTTATGGCCTTTTTGCATTTTGAGCCTTTTTCTATAAAGAGTTATTGGCATAGCTTGGTTCAACGACCTCTTAATCAAGGAAAACAGACAGGTCTCAGTCGATTGCAGGTTTTGATGGCAGCAATATCATTACGAAGAACAAAAGAGAATGCATTGGTGGGGCTTCCACCTAAGATTGTAGAGACTTGTTATGTTGAACTTTCATGTGAAGAACGTAAGTTGTACGATGAGGTGAAAGACGAAATAAAGTCACTTATGATGCATTATGACTACAGTGACAGACTAGTGTTTAGTTATTCCACTATACTAAGTATGATTCTAAGACTCCGTCAGATCTGTGCTGATTTATCCATGTGCCCTTTGGATTTCAAATCATGTCTATTCTCTTCAACTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAGTTAGGATGCTGCAAGATGGTGAAGATTTTGATTGTCCAATTTGTTTATGTCCTCCATCGGATATTGTAATTACATGCTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTACAGCGCAGCAATTCCTGTTGTCCACTTTGTCGGCGCCCCCTCTCTGAATCTGACTTATTCTCAGCTCCCCCTGAATCTTTCAAGACTGATACTACTGAACTGAGTTCGCCAGAAATAAGGTCATCCACCAAAGTGTCTACTCTGATAAAGCTTCTTACTGAATCAAGGGATCACAATCCAGCTACAAAGTCAGTTGTATTTTCACAATTCCGCAAGATGCTGCTGTTGTTAGAAGAGCCTTTAAAAGCAGCTGGTTTTAAAACATTACGTCTTGATGGGACAATGAATGCTAAGCAAAGAGCTCATGTTATTGAACAATTTCAACTCTCAGAAGTTAATGAGCCAATGATTCTGCTTGCAAGTCTCAGAGCTTCAAGTACAGGTATAAATCTTACAGCTGCCTCTAGAGTGTACTTAATGGAACCGTGGTGGAACCCAGCAGTTGAAGAACAAGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAGGAAGTGAAGATTGTTAGGTTGATAGCTAAAAACAGCATTGAAGAGAAAATATTAATGTTGCAAGAGAAGAAGAAAGAAATAACAAGCAAAGGATCTGGGAGGAGATCAAAGGATATTGCTGGTATGGGCATAGATGATCTCCGTTTTGTTTTAGGAGAATAA 2457 0.3976 MYSQEEPYSQSDSQTYLAGFVMANIVGLKYYSGTISGREMVGLVREPLNPYDTNAIRVLNTQSLQVGHIERPVAAVLSPLIDAQLIIVEAIVQTTANSRFSNNKFRIPCQIHIFAHISCFDAVHDAFNDSPVHFISHSDPSFTLSHSVAVKETRADNTATKTTDTTTSNNNLDQIFKLVRQNLNLAEKNRIAEPLNPPSNIIKSELLQHQKEALAWLFRRENSEDLPPFWEEKEGNFVNVLTNYQTNTRPEPLRGGIFADCMGLGKTLTLLSLIAFDKMQMKSGKKRSRSSVVETNGTLIVCPPSVISTWITQLEEHTNRGALKAYMYYGDRRTKDVEELRKYDIVLTTYATLGIELRWPDTAVKKLGWRRIVLDEAHTIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWHSLVQRPLNQGKQTGLSRLQVLMAAISLRRTKENALVGLPPKIVETCYVELSCEERKLYDEVKDEIKSLMMHYDYSDRLVFSYSTILSMILRLRQICADLSMCPLDFKSCLFSSTDIEDVSKNPELLQTLVRMLQDGEDFDCPICLCPPSDIVITCCAHIFCRECILKTLQRSNSCCPLCRRPLSESDLFSAPPESFKTDTTELSSPEIRSSTKVSTLIKLLTESRDHNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGTMNAKQRAHVIEQFQLSEVNEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKEITSKGSGRRSKDIAGMGIDDLRFVLGE 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02013 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 457 IPR027417 -
Car03g02013 818 SMART HIRAN_2 18 117 IPR014905 GO:0003676|GO:0008270|GO:0016818
Car03g02013 818 Pfam Helicase conserved C-terminal domain 646 762 IPR001650 -
Car03g02013 818 SMART ring_2 574 612 IPR001841 -
Car03g02013 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 247 424 IPR014001 -
Car03g02013 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 817 IPR027417 -
Car03g02013 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 558 638 IPR013083 -
Car03g02013 818 Gene3D - 238 463 IPR038718 -
Car03g02013 818 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 278 812 - -
Car03g02013 818 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 8 275 - -
Car03g02013 818 CDD SF2_C_SNF 644 773 - -
Car03g02013 818 SMART ultradead3 202 438 IPR014001 -
Car03g02013 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 813 IPR001650 -
Car03g02013 818 Pfam HIRAN domain 21 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Car03g02013 818 Pfam Zinc finger, C3HC4 type (RING finger) 574 612 IPR018957 GO:0046872
Car03g02013 818 Coils Coil 775 795 - -
Car03g02013 818 Gene3D - 9 132 - -
Car03g02013 818 Pfam SNF2-related domain 209 534 IPR000330 GO:0005524|GO:0140658
Car03g02013 818 Gene3D - 472 808 IPR027417 -
Car03g02013 818 ProSiteProfiles Zinc finger RING-type profile. 574 613 IPR001841 -
Car03g02013 818 SUPERFAMILY RING/U-box 570 622 - -
Car03g02013 818 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 278 812 - -
Car03g02013 818 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 8 275 - -
Car03g02013 818 SMART helicmild6 677 762 IPR001650 -
Car03g02013 818 ProSitePatterns Zinc finger RING-type signature. 589 598 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02013 Car-Chr3 66289354 66292971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02013 13 802 RAD5 or RAD16-like Gene Family AT5G05130 59.880 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g02013 SNF2_N 2.9e-75 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02013 K15711 - vvi:100263696 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02013 03 66289354 66292971 Car03g02013 03 66289354 66292971 ECH