Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02011 ATGAAGTCAGGGTCACTGGATCAGTGGAGGAACTACTTTAGGTCGTCAAATTCGGATATTTTCGACATAATTGACTATGCAATTGTGGTTGCTGCTTCTGATTGTCCAAAGGAGTTTAAGTTGAGGAGAGATAAGATTGCTGAGAGGTTGTTCTCTTGTAAGTTGACTCGTTGTTTGGGGTGTGATAAGGTTGAATTGGCTGTGAATGGGGATGATGATCATGAAGGTTGCAAGAGTGATGGTGTTGAGTTTGGAGCTGGTGGAAGCAAAGAGAGTAAGGTGAATGATCATGGATTGATGATGGATGGTAACCTTGTTAGCAATTATAGCTTTGGTGAAGCTGAGGCTTTGACTGATGAGATTGAAGAAGAATCTCAGTTTGTTGGTGAGGTTTTGAGGATTAGAGACATTCTCAATAACCGTGATGAAGAGTCTGACTCTGTGCTGTTTGAGTCATTGAGGAGGCTTGAGCTGATGGAACTCTCTGTGGATCTTCTGAAGGCAACTGAGATTGGAAAGGTTGTCAATCCTCTCCGAAAGCATGGATCAAAGGAAGTACGTCAACTCGCACGGACTCTTATCGATGGCTGGAAAGAAATGGTGGATGCGTGGGTGAAGGTGACAACAACCACCGCTATCACAGGCTCAGAAGGTGGCACGCCAGATTCAGTGAATCCGTCTGTTGTCGACGATGAAGAGTTGGAAGAAGGACTTCCATCACCTCCTTTGGATGAAGGTGCTTTCTTTGTCGCTCCCACTGGCACGATTGAACTCTCACAGTTCTTCGATGGCATGGATGATGATGGAAATCCTCGACAGAGTGTGCAATTCAATAAGAACCGTGACAACGGCAGAAAGCCAACCTCGGGAAATCAAGTTACCGACAAGAGGAAATTGCAGGCTTCCAATGAAACAACCCTTGCTGGCAACGACAATAAGAGTCAGCAAATGAAGAAAAATGAGGCCGCTGTGAGGCTGTATAAGCCGGTAGCTGCTGATTCTGGTCTTCGTAGACCACCAAGTTCAAATGATCAGCGAAAAACCAATATGGAGCTGAAGATGCAGCAAAAAGTAGAAAATGGAACCCTCACTAAGAGGCCTCTCGTTACTCATCAAGAGAAACCCAAGTGTTCGGATGACGCCGCTAAGCTCGAAGCCACTAAGCGGAAACTTCAAGAGCGCTATCAACAAGCTGAAAATGCTAAGAGGCAAAGGACAATTCAAGTTATGGAATTGAACGATCTTCCAAAGCAAGGGGGCGGCCTACGAAATTCACATTTCAAACCGGGAAATCACAATAGGCAATGGGGTCAAGGGCGTAGATAG 1326 0.4548 MKSGSLDQWRNYFRSSNSDIFDIIDYAIVVAASDCPKEFKLRRDKIAERLFSCKLTRCLGCDKVELAVNGDDDHEGCKSDGVEFGAGGSKESKVNDHGLMMDGNLVSNYSFGEAEALTDEIEEESQFVGEVLRIRDILNNRDEESDSVLFESLRRLELMELSVDLLKATEIGKVVNPLRKHGSKEVRQLARTLIDGWKEMVDAWVKVTTTTAITGSEGGTPDSVNPSVVDDEELEEGLPSPPLDEGAFFVAPTGTIELSQFFDGMDDDGNPRQSVQFNKNRDNGRKPTSGNQVTDKRKLQASNETTLAGNDNKSQQMKKNEAAVRLYKPVAADSGLRRPPSSNDQRKTNMELKMQQKVENGTLTKRPLVTHQEKPKCSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQGGGLRNSHFKPGNHNRQWGQGRR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02011 441 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 127 208 IPR035441 -
Car03g02011 441 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 440 IPR044805 -
Car03g02011 441 MobiDBLite consensus disorder prediction 260 349 - -
Car03g02011 441 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 440 - -
Car03g02011 441 Pfam TFIIS helical bundle-like domain 153 201 IPR017923 -
Car03g02011 441 MobiDBLite consensus disorder prediction 213 248 - -
Car03g02011 441 ProSiteProfiles TFIIS N-terminal domain profile. 129 204 IPR017923 -
Car03g02011 441 SMART TFS2_5 128 203 IPR003617 GO:0005634
Car03g02011 441 Coils Coil 381 408 - -
Car03g02011 441 MobiDBLite consensus disorder prediction 271 319 - -
Car03g02011 441 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 120 213 IPR035441 -
Car03g02011 441 CDD TFIIS_I 130 202 - -
Car03g02011 441 MobiDBLite consensus disorder prediction 415 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02011 Car-Chr3 66261701 66265638 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Car03g02011 Med26 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02011 - - gmx:100799367 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02011 03 66261701 66265638 Car03g02011 03 66261701 66265638 ECH