Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02004 ATGTGTGGAGAGATGGAAAGCTGCATTAGCAGCAGCAACGGTCAACGAACAGCTGAGGATATCATTGGTGGAAACGCCAAAGCTATTCAAACCCTCAGAGAGTTTATCACATACCCTCATCTCTTCTCTACTGAAGCAAAGAAGCTTGGCCTTAAATGGCCAAGAGGGTTATTGCTGTATGGTCCACCAGGCACTGGAAAGACCAGTTTGGTAGAGGCAGTTGTTAAGATCGAATGTGGGGCAAATTTGACAATTATCAGCCCACACAGTGTTCTTAGCGCAAAAGCTGGTGAAAGTGAGAGAAATCTCCGTGAGGCCTTTTCAGAGGCATCATCTCATGTAGCCTTGGGCAAGTCTTCAGTTATCTTCATAGACGAAATAGATGCACTTTGTCCTCGTCGAGATTCCAAAAGAGAGCAAGATGTCCGAGTTGCTTCCCAACTTTTTACTTTGATGGACTCAAACAAACCAACCTCTTCTACACCAGGTGTTGTTGTGGTTGCCTCGACTAACAGTGTGGATGCAATTGACCCTGCCCTAAGACGGTATGGACGTTTTGATGCTGAAATTGAAGTCACGGTCCCAAATGAAAAGGAGCGTCTTCAAATTCTAGAGCTGTATACAAGGAGGATTCCTCGGGATTCATGCGACTTAGAATCCATTGCTGCATCATGCAATGGATATGTCGGAGCTGATTTAATGGCATTGTGTCGTGAAGCTATCGAATCTGCAGTCGAAAGGTCCTCCAATGCCAATAAAGATGTTAGTAATTCCAGTTTAACAATGGAAGATTGGAAGAAAGCAAGGTCCCTTGTTAAACCAAGTATAACAAGAGGCATCACTGTGGATATTCCCAAAGTGACTTGGAAAGACATTGGGGGATTGAAAGACTTGAAGAAAAAGCTCGAGCAAGCCGTTGAGTGGCCTATGAAGCATGCTGCCACATTTTCAAGATTGGGAATAACCCCTGTTCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACTCTTGCTAAGGCTGCTGCAAATGCTGCTAATGTCCCTTTCTTTTCCTTGAGTGGTGCAGAATTATTTTCAATGTATGTCGGAGAGGGAGAAGGTTTGCTTCGTAATACATTTCGCAAAGCACGGCTTGCGGGAAAAAGTATAATATTTTTTGATGAGGCTGATGTAGTAGCTGGCAAACGGGGTGATGGTTCGAGCGGTGGTGCTGTAGTGGGAGAAAGACTTTTATCCACTCTGCTTACTGAGATGGATGGCTTAGAAGAAGCTAAAGGAGTCCTTGTTTTGGCAGCTACAAATCGCCCTTATGCAATCGACGCTGCACTTATGCGTCCCGGACGATTTGATTTGGTTTTGTATGTGCCGCCACCTGATTTGGAGGGTCGATTTGAGATACTTAATGTACACACAAGTAAGATGAACTTAGGGAGTGATGTTGATCTCAGAAGATTAGCAGAAGACACTGAGCTCTTCACAGGCGCCGAACTAAAGGGATTATGTAATGAAGCTGGAATAGTAGCTCTGAGAGAAAACATTCATGCTAGTGTTGTTTGTGACCGCCATTTCCAgattgtaaagaattctttaaaaccagcattaacaacagaagaaattgattcatactcatcttttatgaggacaTCGTCTCGAAAACCATAA 1671 0.4255 MCGEMESCISSSNGQRTAEDIIGGNAKAIQTLREFITYPHLFSTEAKKLGLKWPRGLLLYGPPGTGKTSLVEAVVKIECGANLTIISPHSVLSAKAGESERNLREAFSEASSHVALGKSSVIFIDEIDALCPRRDSKREQDVRVASQLFTLMDSNKPTSSTPGVVVVASTNSVDAIDPALRRYGRFDAEIEVTVPNEKERLQILELYTRRIPRDSCDLESIAASCNGYVGADLMALCREAIESAVERSSNANKDVSNSSLTMEDWKKARSLVKPSITRGITVDIPKVTWKDIGGLKDLKKKLEQAVEWPMKHAATFSRLGITPVRGILLHGPPGCSKTTLAKAAANAANVPFFSLSGAELFSMYVGEGEGLLRNTFRKARLAGKSIIFFDEADVVAGKRGDGSSGGAVVGERLLSTLLTEMDGLEEAKGVLVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEGRFEILNVHTSKMNLGSDVDLRRLAEDTELFTGAELKGLCNEAGIVALRENIHASVVCDRHFQIVKNSLKPALTTEEIDSYSSFMRTSSRKP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02004 556 Pfam ATPase family associated with various cellular activities (AAA) 57 192 IPR003959 GO:0005524|GO:0016887
Car03g02004 556 Pfam ATPase family associated with various cellular activities (AAA) 327 459 IPR003959 GO:0005524|GO:0016887
Car03g02004 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 543 IPR027417 -
Car03g02004 556 Gene3D - 5 195 IPR027417 -
Car03g02004 556 Gene3D - 277 461 IPR027417 -
Car03g02004 556 Gene3D - 462 552 - -
Car03g02004 556 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 61 80 - -
Car03g02004 556 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 398 417 - -
Car03g02004 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 277 IPR027417 -
Car03g02004 556 Pfam AAA+ lid domain 217 265 IPR041569 -
Car03g02004 556 Pfam AAA+ lid domain 482 527 IPR041569 -
Car03g02004 556 Gene3D - 196 276 - -
Car03g02004 556 PANTHER AAA-FAMILY ATPASE 26 533 - -
Car03g02004 556 CDD AAA 23 192 - -
Car03g02004 556 ProSitePatterns AAA-protein family signature. 430 448 IPR003960 GO:0005524|GO:0016887
Car03g02004 556 SMART AAA_5 53 196 IPR003593 -
Car03g02004 556 SMART AAA_5 323 462 IPR003593 -
Car03g02004 556 CDD AAA 323 460 - -
Car03g02004 556 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG B 26 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02004 Car-Chr3 66155517 66162869 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02004 259 548 Calmodulin-binding Proteins AT3G56690 44.828 6.98e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02004 - - gmx:100814288 826.624