Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g02003 ATGGACACGGGCGAGCCAGGACAGCGATGGGTGACACCGTGCCGCAAATGGCGTGGTCAACGCGCAGGGTTGGGTCGCAGGACATGTTACGACGGTCTACTCGGATATCGTGTAACATGGTGGGATGACAACAACAAGCTTAGAAATCATGATCAGATAATAACACCCTCGGTTCTGcatgcaattgaagatccctctgatgcatgtcaTTATGAAGGTATGATTGGACAAGCTTTTAAAGATTTTACACAAAAAATCTGGAAGCAAGATGAATCAAGTGAAGGTAGCAATATTTCAGGATTTGTTGTGGATTCTAGGAACAAAAGTAAAGATATAAAGAATTTAGTTGAACATGCAGCTCATTTGCTGGACAAGACATACCTATTcgttgccgaccatccagtgggagtagagtctcgggtgcaagaagtgattcaactactgaacaacaaaccatcggatcatactctacttgtagggatatgggggatgggagggataggtaaaacaaccattgcgaaaggcacttataatcgaatggggtgcagttttgaggataagagcttcctcctaaatgttggacgggtttggaaccagactaatggccaagtttccttacaacaatggcttctttcagatatctacaaaacaacaaaagtagagacaaagacatttgatttagccataaatatactaaaggaaagacttaacaaaagaaggatatttcttgtgcttgacgatgttcgtggtttgaaccaattctatgctttgtgtggagctggtggccttgaatggtttggtcaaggaagtagaattattatcacaacaagatatagacatatacttcatcaacttaacgctgaccatgtatatgaaatgaaagcaatggacaaatatgagtctcttgaactttttagttggcatgcattcaagcaaccaagtcctattggaggttttggtttcttttctagagacgctgttttgtgctctaggggaatgccgctgactcttcaagttattggatcctttttgtttactaagggatggaaaaaatggaagagtgtgttgaacaaactcaaaatcactccggatgacataatggggatgctgggaataagttttggtggtttaattaatgatgaagtcaaaaaaatatttcttgacatagctttgaacttaattgggatggaccaggatgatgtaattcaaatattaaaagcatctggttattctgcagaaactggaattagagcccttgtacaacaaagccttgtaactgtagattgcaagaacaggattgatatgcatgatttggtactggaatttggaagagaagtcatAAGGAAAAAATCAACGGGTATGGATGAGGAAAGGATCtacgatgtatttttgagttatagagaagactgccgcacaaaatttattgcacatatctatacagctcttcaaaatgccgggatttatgttttcagagataatgatgagattcaacgaggagatcaaatatcagtctcactgttagaagcaataagacaatctagaatcgctattgttgttttgtctagaaattatgctagttcaagatggtgtatgctagagttggagaccatcatggacattggcagaacccagggtctggtggttgtgccagttttctatgaggtagatccctcgGAAGTACGACATCAGACAGGTAAGTTTGGAAAAGCTTTTAAAGATCTCATATCAAGAACCTCAGCGGATGAAGACAAGAAGACAAATTGGGAAACATCACTCCTTGAAGTTGGTGGCATAGCAGGGGTTGTCATCATAAATTCCAAGAATGAAAGTGAGGATATCACGAAAGTAGTAGACCATGTTACCAATTTGCTGGAcaggacagatttattcgttgcagaccatccagtgggggtagaatctcgtgtacaagatgttattaaactgttgaacagtcaagaatcaaaagacagtctgctgcttggagtatggggcatgggagggatcggtaaaacaacaattgctaaagccgcttacaataaaattcgtcgtgattttgaggcaaagagcttcctcctaaatgtcagggaaatttgggaacaagataatggcaaaatttctctacagcaacgccttctttctgatatatacaaaacaacaaaaataaagatagatacggttgaatcaggaaaaatgatattacaggaaagacttcgccaaaagaagatatttcttgttcttgacgatgtgaataaattggatcaattgaatgctttgtgcggaagtcgcaaatggtttggtcaaggaagtaaaataatcatcacaacaagagatgatgatttactttgtagacttaaagttgactgtgtatatagaatgaaagaaatggacggcaatgaatctatcgagctttttagttggcatgcattcaagcagccagatccttttgaaggttttgctgacctttctagagatgttgttaagtactctgggggattgccactagctcttcaagtcatcgggtcctttttgttgactaggagaaggaaaaaagagtggaagagtgtaatggagaaactcaaacacattcccaatgacaaagtgttagagaagctcagaataagttttgatggtttaagtgatgatgacgtgaaagagatattccttgatattgcttttttctttattggaatggaccaggaagatgtaactaagatattgaaaaactgtggacactatgcagaaatcggaataagtgtcctcgtacaacagagccttgtaactgttgataggaagaacaaggttggaatgcatgatttgctaagagacatgggaagagagattgtccgcaataaatcaacagaggcaggcaaggagcctagtaggttatggcgttgcgaagatgttcataatgtgttgtcaaaagatactAAAACTATAGATGTTAAGGGACTGACTTTAAAGATGTCAAGAATGGACTCACCAACTTATTTAGAAACTAaagcatttgagaagatggataagcttagattacttcaacttgctggcatacaacttgatggagattacaagcatttttcaagagatcttcgatggctttgttggcatggatttcctttaaaatatataccagcagactttcatcaaggcagtttagttgccgctgacttaaaatattccaatctggaacaagtgtggaagtctcagtttctgaaggggctgaaaattcttaatcttagtcattctcataacttgagacaaaccccagacttttctaacttgccaaatcttgaaaagttaatactcaaagactgtccaaGATTCTCACGTAATGTGTTTCCTTCAATTATTCAATCTTGGATGTCTCCAACAAATAATATCCTATCCCTAGTTCATACACCTGCAGGCACATCATCTCTTGAGTTCTTAGATGAGCAAAATGATAGTTTCTATGGTCTACCATTGATTTTTAAAGACCTTCAGATTCTTCAACGTCTTTGGTTGAAATGTGAGTCAGAAGCTCAACTAAACCAAACTCTAGCAAGTATTCTGGATAACTTACCTTCCAAAAGTTTTGAGGAATTGGAAGCAATGCAAAACACACCACAAACCTCAAATGTTATGACTTCAGCATCAATTGATTGTTGTATTAAAGTTCAAATTTCAAGCTCACAAAATTCCTCGACATCCCTTTTAATTCAAATGGGAATGAACTGCCatgtcactactactctcagagaaagcattttacagAAAATGCCTCCCAAAGGGTCTGGTTTTCTCCCCGATGACAATTATCCTGATTGGCTAACCTTCAACGATAACGGTTCTTCTGTAACTTTCAAAGTACCTCAAGTGGATGGACGTAGCTTGAAAACAATCATGTGCGTTGTCTATTCTTCTTCTCCAGATGATATAACATCAGAAGGCCTTAAAGTTATGTTGGTGATAAATTGCACAAAGAACACCATTCAGCTCTATAAGAGAGATGCATTATTGGCCTCCTCTGATGAAGAGGAGTGGCAGAGAATAGTATCAAATACAGAACCAGGCGACATAGTGAAAGTTCTTGTTGTTTTTGGACATGAATTCATTGTGAAAAAGACATCGGTCTACCTTATCTATGATGAACCGATTGACCAAAAGGCAAAGCACTGCCTTGAGCCAGATAAGAATATCACTTTTTCTAGTGGTGATGGAAATATATATGGCAGACTCTTCTTCAGACTTCCTTCCCTTGTTCGAGCCGTTCTGATTTCACGACCTTTCTGGTTCTTTTTGGGTGTCATTATGGTCTGGTGGTCTCGCTACGATTCTAACAAACGAAGAAGTTTAAGGAAAAGACATCCGAGAGCTCTTGAGGATTCTGTTATCCCTTGTCAAGGAACGAACTTCTTTTGGGTTATGTACAGCAAGATTTTAAAATGCTGTCGTCGTGGCTATCCATAA 4446 0.1563 MDTGEPGQRWVTPCRKWRGQRAGLGRRTCYDGLLGYRVTWWDDNNKLRNHDQIITPSVLHAIEDPSDACHYEGMIGQAFKDFTQKIWKQDESSEGSNISGFVVDSRNKSKDIKNLVEHAAHLLDKTYLFVADHPVGVESRVQEVIQLLNNKPSDHTLLVGIWGMGGIGKTTIAKGTYNRMGCSFEDKSFLLNVGRVWNQTNGQVSLQQWLLSDIYKTTKVETKTFDLAINILKERLNKRRIFLVLDDVRGLNQFYALCGAGGLEWFGQGSRIIITTRYRHILHQLNADHVYEMKAMDKYESLELFSWHAFKQPSPIGGFGFFSRDAVLCSRGMPLTLQVIGSFLFTKGWKKWKSVLNKLKITPDDIMGMLGISFGGLINDEVKKIFLDIALNLIGMDQDDVIQILKASGYSAETGIRALVQQSLVTVDCKNRIDMHDLVLEFGREVIRKKSTGMDEERIYDVFLSYREDCRTKFIAHIYTALQNAGIYVFRDNDEIQRGDQISVSLLEAIRQSRIAIVVLSRNYASSRWCMLELETIMDIGRTQGLVVVPVFYEVDPSEVRHQTGKFGKAFKDLISRTSADEDKKTNWETSLLEVGGIAGVVIINSKNESEDITKVVDHVTNLLDRTDLFVADHPVGVESRVQDVIKLLNSQESKDSLLLGVWGMGGIGKTTIAKAAYNKIRRDFEAKSFLLNVREIWEQDNGKISLQQRLLSDIYKTTKIKIDTVESGKMILQERLRQKKIFLVLDDVNKLDQLNALCGSRKWFGQGSKIIITTRDDDLLCRLKVDCVYRMKEMDGNESIELFSWHAFKQPDPFEGFADLSRDVVKYSGGLPLALQVIGSFLLTRRRKKEWKSVMEKLKHIPNDKVLEKLRISFDGLSDDDVKEIFLDIAFFFIGMDQEDVTKILKNCGHYAEIGISVLVQQSLVTVDRKNKVGMHDLLRDMGREIVRNKSTEAGKEPSRLWRCEDVHNVLSKDTKTIDVKGLTLKMSRMDSPTYLETKAFEKMDKLRLLQLAGIQLDGDYKHFSRDLRWLCWHGFPLKYIPADFHQGSLVAADLKYSNLEQVWKSQFLKGLKILNLSHSHNLRQTPDFSNLPNLEKLILKDCPRFSRNVFPSIIQSWMSPTNNILSLVHTPAGTSSLEFLDEQNDSFYGLPLIFKDLQILQRLWLKCESEAQLNQTLASILDNLPSKSFEELEAMQNTPQTSNVMTSASIDCCIKVQISSSQNSSTSLLIQMGMNCHVTTTLRESILQKMPPKGSGFLPDDNYPDWLTFNDNGSSVTFKVPQVDGRSLKTIMCVVYSSSPDDITSEGLKVMLVINCTKNTIQLYKRDALLASSDEEEWQRIVSNTEPGDIVKVLVVFGHEFIVKKTSVYLIYDEPIDQKAKHCLEPDKNITFSSGDGNIYGRLFFRLPSLVRAVLISRPFWFFLGVIMVWWSRYDSNKRRSLRKRHPRALEDSVIPCQGTNFFWVMYSKILKCCRRGYP 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g02003 1481 SUPERFAMILY Toll/Interleukin receptor TIR domain 454 600 IPR035897 -
Car03g02003 1481 PRINTS Disease resistance protein signature 736 750 - -
Car03g02003 1481 PRINTS Disease resistance protein signature 659 674 - -
Car03g02003 1481 PRINTS Disease resistance protein signature 1068 1084 - -
Car03g02003 1481 PRINTS Disease resistance protein signature 829 843 - -
Car03g02003 1481 SMART AAA_5 155 297 IPR003593 -
Car03g02003 1481 SMART AAA_5 656 796 IPR003593 -
Car03g02003 1481 Gene3D Ribonuclease Inhibitor 963 1252 IPR032675 -
Car03g02003 1481 Pfam TIR domain 460 622 IPR000157 GO:0007165
Car03g02003 1481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 468 1115 IPR044974 GO:0006952
Car03g02003 1481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1150 1374 IPR044974 GO:0006952
Car03g02003 1481 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 46 457 IPR044974 GO:0006952
Car03g02003 1481 SUPERFAMILY L domain-like 991 1197 - -
Car03g02003 1481 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 468 1115 - -
Car03g02003 1481 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 1150 1374 - -
Car03g02003 1481 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 46 457 - -
Car03g02003 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 389 IPR027417 -
Car03g02003 1481 SUPERFAMILY "Winged helix" DNA-binding domain 865 972 IPR036390 -
Car03g02003 1481 Gene3D - 795 879 IPR042197 -
Car03g02003 1481 Gene3D - 295 377 IPR042197 -
Car03g02003 1481 SMART till_3 459 598 IPR000157 GO:0007165
Car03g02003 1481 Gene3D - 122 291 IPR027417 -
Car03g02003 1481 Gene3D - 625 789 IPR027417 -
Car03g02003 1481 Gene3D - 454 624 IPR035897 -
Car03g02003 1481 SUPERFAMILY "Winged helix" DNA-binding domain 365 454 IPR036390 -
Car03g02003 1481 ProSiteProfiles TIR domain profile. 458 624 IPR000157 GO:0007165
Car03g02003 1481 Pfam NB-ARC domain 639 861 IPR002182 GO:0043531
Car03g02003 1481 Pfam NB-ARC domain 138 360 IPR002182 GO:0043531
Car03g02003 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 890 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g02003 Car-Chr3 66126979 66136909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g02003 84 458 WRKY Transcription Factor Family AT4G12020 29.820 1.96e-37 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g02003 - - mtr:MTR_7g088950 1395.56