Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01996 ATGACACTATTCTCTCTACAAAGTGAACTTTACTCAGAATTCCCACTTAGAGAAATTGGAAATCAAGGTCTCACTAAACGGATTCTCAGAAATGGTATCACTTGGCAAACTCCATTCTCTGGAGACCAAGTTGAAGTTCATTTCAGAGGTCAAGTTGAAAATGGACCGTCACTTGAATCAAGCTATGATAAAGGGTCCTCGTTTCATTTCAAATTAGGCCACGGGGAAGTTATCAAGGGTTGGGATGAAGGAGTTGCTACAATGAAAAAAGGGGAGAGAGCAATCTTGAAAATACCACCTAATTTAGCATATGGAGAAGTAGGTTCTCCACCGTTGATTCCTCCAAATGCAACTCTCATTTTTGACATTGAAATGTTGTCTTGGAGTACCATCAGGGACTTGACTAGCGATGGAGGAATCATGAAAAAGATTATAAAGGATGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTTCTAGTGAAATATGAAGCAAGGCTTGAGAATGGAAAGCTTATGAAGTCTGATAAATGTGTAGAGTTTAATGTAAGTGATGGCTATCTTTGTCCAGCCATGAGTATAGCAGTAAAGACTATGAGAAAGGGGGAGGTTGCAGAGCTTGCTTTGAAATTATCTTATGGCCTAACTCAAAATTCAAATAGAGCCATTGAGCTTGATGGTTTACCAGATCCTAATTTAATTAGCATCAAACTTGAGCTGGTATCATGGAAAGTTGTTACTGATATAGTTGGAGATAAAAAGATACTGAAAAAAATCAATATAGCTGGTGAGGGGTTTGATCGTCCTAACGAGGGATCCCAAGTGAAAGTCATATATTTCTGTAAAGGAGAAGATGGTAATATTATTGAGACTAAAGGGTCAAAGGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTGAATGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACATGCTCTGGTGACTGTCAATGCTGAATATTTTCGTGACCATAGTAATTTACAAGGAAACAAGACAAATAATAAAATCCTTCACTATGAAGTTGAATTGGTTGATTTCATTAAGGAGAAGCCATTTTGGAAAATGGACACCATAGAGAAACTAGAAGCTTGTGAGCAGGGGAAGCATGATGGAAATCTGCTGTTCAAGGCTCAAAATTTTAGGCGCGCATCACAGAAATATGAAAAGGCTGTGAAATACATTGAATTTGATCACACATTTAGTGACGGTGAGAAGCGTCATGCTAATTCCTTGAGATTATCTTGTAATTTGAACAATGCTGCTTGTAAACTTAAATTGGGAGAGTACACTGAAACTGCCAAGCTATGCACAAAGGTCCTAGAACAAGATCACTTAAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATACCTTAAAACATCAGATTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCTCTAATTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTCAAACTGAAGCAAAAGGAGTACAGTAAATATGAGGCTAACATCTTTAGCACAATGGTTTCAAGGATGAATTAA 1584 0.3769 MTLFSLQSELYSEFPLREIGNQGLTKRILRNGITWQTPFSGDQVEVHFRGQVENGPSLESSYDKGSSFHFKLGHGEVIKGWDEGVATMKKGERAILKIPPNLAYGEVGSPPLIPPNATLIFDIEMLSWSTIRDLTSDGGIMKKIIKDGEGWATPKELDEVLVKYEARLENGKLMKSDKCVEFNVSDGYLCPAMSIAVKTMRKGEVAELALKLSYGLTQNSNRAIELDGLPDPNLISIKLELVSWKVVTDIVGDKKILKKINIAGEGFDRPNEGSQVKVIYFCKGEDGNIIETKGSKEEPFEFTTQEEQVNEGLERAIMTMKKAEHALVTVNAEYFRDHSNLQGNKTNNKILHYEVELVDFIKEKPFWKMDTIEKLEACEQGKHDGNLLFKAQNFRRASQKYEKAVKYIEFDHTFSDGEKRHANSLRLSCNLNNAACKLKLGEYTETAKLCTKVLEQDHLNVKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDIKLEYKELKLKQKEYSKYEANIFSTMVSRMN 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01996 527 Gene3D - 246 363 IPR046357 GO:0003755
Car03g01996 527 SMART tpr_5 461 494 IPR019734 GO:0005515
Car03g01996 527 SMART tpr_5 378 411 IPR019734 GO:0005515
Car03g01996 527 SMART tpr_5 427 460 IPR019734 GO:0005515
Car03g01996 527 Gene3D Tetratricopeptide repeat domain 364 521 IPR011990 GO:0005515
Car03g01996 527 SUPERFAMILY FKBP-like 134 215 - -
Car03g01996 527 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 41 129 IPR001179 GO:0003755
Car03g01996 527 SUPERFAMILY FKBP-like 243 380 - -
Car03g01996 527 SUPERFAMILY FKBP-like 20 129 - -
Car03g01996 527 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 157 245 IPR001179 GO:0003755
Car03g01996 527 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 38 126 IPR001179 GO:0003755
Car03g01996 527 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 153 220 IPR001179 GO:0003755
Car03g01996 527 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 269 358 IPR001179 GO:0003755
Car03g01996 527 Gene3D - 15 131 IPR046357 GO:0003755
Car03g01996 527 Pfam Tetratricopeptide repeat 461 494 IPR001440 GO:0005515
Car03g01996 527 Gene3D - 132 245 IPR046357 GO:0003755
Car03g01996 527 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 273 361 IPR001179 GO:0003755
Car03g01996 527 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 239 350 - -
Car03g01996 527 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 356 527 - -
Car03g01996 527 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 248 - -
Car03g01996 527 PANTHER PEPTIDYLPROLYL ISOMERASE 356 527 - -
Car03g01996 527 PANTHER PEPTIDYLPROLYL ISOMERASE 12 248 - -
Car03g01996 527 PANTHER PEPTIDYLPROLYL ISOMERASE 239 350 - -
Car03g01996 527 ProSiteProfiles TPR repeat profile. 461 494 IPR019734 GO:0005515
Car03g01996 527 SUPERFAMILY TPR-like 382 522 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01996 Car-Chr3 66026854 66031184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01996 18 526 Calmodulin-binding Proteins AT5G48570 52.408 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01996 - - gmx:100785412 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01996 03 66026854 66031184 Car03g01996 03 66026854 66031184 ECH