Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01961 ATGGTGAAGAAGCGAAAACTCCCAGCTAAATCTTCTCAACCAGCAGAGGAACCCCCACTCAAGCAGCATCAACCGGAGCCGGAGCTAGAACCGGAACCATACATCCCCGCCgaagaatacgaagaagtcgaagaagaagttgaggaagaatacgaagaagtagaggaggaagaggaggaagaagaagaagaggaggaggaggaggaagaagaagaacaacctcaaggagtcgaataccaagacgaagacgaagaaCCAATCCAGAAGCTTCTAGAACCTTTCACTAAAGACCAGATCGCGAGTCTTCTTTGCGAGGCGGCTTCTAAACACCGTGACGTGGCTGATCGGATCCGCAAAATTGCCGATGGAGACGCGGCGCACAGGAAAATCTTCGTTCACGGTTTAGGATGGGACACCACCTCCGCAACCCTAATCAATGCATTTTCGCAATACGGTGAAATCGAAGACTGTAAAGCGGTTACTGACAAAGTTTCCGGTAAATCCAAGGGTTACGGTTTCATCCTCTTTAAGAAACGAAGCGGAGCGCGAAACGCGTTGAAGGAGCCTCAGAAGAAGATCGGTAACCGTATGACGGCGTGCCAGCTGGCATCCATAGGTCCCGTGCAGAATTCTCTGCAACCTACGCCGCAGGTTACGCCGCAAACGTCTGAGTATACGCAGAAGAAGATCTATATCAGTAATGTTGGCCCCGATCTTGATCCTCAGAAGCTTTTCACGTTTTTTTCGCGGTTTGGAGAGATTGAGGAAGGGCCGTTAGGGCTTGACAAGGCAACGGGAAAACCGAAAGGGTTCTGTTTGTTTGTTTACAAGAGCGCTGAGAGTGCGAGGAGGGCGTTGGAGGAGCCTCATAAGGAATTCGAGGGACATATTTTGCACTGCCAGAAGGCAATTGATGGACCTAAGGTGGTGAAaacacatcatcaacaacaacagcaacaacaCGTGAATTCATTGAATCCGTTGAATCATCTGAATCAATTGACTCAGAGGACGCAATATCAGAGAAATGACAATGCTGGATTTGTTGTTGGTGGTGGTGGAAGTAGTGTTGCAGTTAGCCAACAAGGACATTTAATGGCGCCGGCAGGACAAGGACAGGCGGTTGGGTACAATCAGGCTGCTACTGCCGCAGCAGCGCAGGGCCTGAACCCTGCGCTGACTCCGGCGCTTGGACAGGCTTTGACGGCCCTGCTAGCTTCTCAGGGTGCTACTTTGGGATTGACTAATTTGTTGGGGAGCCTTGGAACGAGTACTGCGGTTAATCCAGGTGTTCCTACTGCGGGACACGGAGTTCAGAGTGGATACAGTGCTCAGCCTGGTATAAATCCAAGTGTTATGGGAGGAGCATATGGGAGTTCAGTGCCGCAGGTGCAATATCCGAACCAGCAGGTTGGACAGGGTGGTTCTGGAAGAGGGCAATATGGTGGTGCTGCACCTTACATGGGGCACTAG 1473 0.4535 MVKKRKLPAKSSQPAEEPPLKQHQPEPELEPEPYIPAEEYEEVEEEVEEEYEEVEEEEEEEEEEEEEEEEEEQPQGVEYQDEDEEPIQKLLEPFTKDQIASLLCEAASKHRDVADRIRKIADGDAAHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKKRSGARNALKEPQKKIGNRMTACQLASIGPVQNSLQPTPQVTPQTSEYTQKKIYISNVGPDLDPQKLFTFFSRFGEIEEGPLGLDKATGKPKGFCLFVYKSAESARRALEEPHKEFEGHILHCQKAIDGPKVVKTHHQQQQQQHVNSLNPLNHLNQLTQRTQYQRNDNAGFVVGGGGSSVAVSQQGHLMAPAGQGQAVGYNQAATAAAAQGLNPALTPALGQALTALLASQGATLGLTNLLGSLGTSTAVNPGVPTAGHGVQSGYSAQPGINPSVMGGAYGSSVPQVQYPNQQVGQGGSGRGQYGGAAPYMGH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01961 490 Gene3D - 37 208 IPR012677 -
Car03g01961 490 Gene3D - 209 323 IPR012677 -
Car03g01961 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Car03g01961 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 196 IPR000504 GO:0003723
Car03g01961 490 MobiDBLite consensus disorder prediction 1 83 - -
Car03g01961 490 CDD RRM_RBM24_RBM38_like 228 303 - -
Car03g01961 490 SUPERFAMILY RNA-binding domain, RBD 127 208 IPR035979 GO:0003676
Car03g01961 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 317 IPR000504 GO:0003723
Car03g01961 490 MobiDBLite consensus disorder prediction 467 490 - -
Car03g01961 490 PANTHER - 17 490 - -
Car03g01961 490 CDD RRM_RBM24_RBM38_like 128 203 - -
Car03g01961 490 SUPERFAMILY RNA-binding domain, RBD 212 322 IPR035979 GO:0003676
Car03g01961 490 SMART rrm1_1 229 301 IPR000504 GO:0003723
Car03g01961 490 SMART rrm1_1 129 201 IPR000504 GO:0003723
Car03g01961 490 MobiDBLite consensus disorder prediction 32 81 - -
Car03g01961 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 205 IPR000504 GO:0003723
Car03g01961 490 Coils Coil 37 74 - -
Car03g01961 490 PANTHER GEO13361P1-RELATED 17 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01961 Car-Chr3 65688018 65694303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01961 224 307 C2H2 Transcription Factor Family AT2G19380 34.524 2.45e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01961 K12741 - gmx:100784200 517.309