Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01959 ATGTATCATGCAAAGAAGTTTCCGCAGGCAACGATGGTGCCGCATAAATCTCAAGGTGGAGCTGAACAACTTGCAAATGTTGGGGTTTTGAATGGATCTGCTGTGAAAAATGTAGCACCTGCTGGAGGAAGTGGGAAACAACGTTTGCGTTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGAAGTATCGCTTGGCAAAGTACTTGCCCGAATCACCAGCTGATGGTAAAGATTCTAAAGATGAGAAAAGAAATTCTGGAGACAGCAATTCTGGCGCTGAGTCTTCTCCGGGTTTGCAAATCAATGACGCGCTAAGAATGCAGATGGAGGTTCAGAAACGTCTGCACGAACAACTTGAGGTTCAGAAGCAGTTACAAATGAGAATTGAAGCTCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAATTAGGCAGTACCTTGACAGCCTCGGAAACGTTCCCGTTGCCCCATGAAAAGCAAAATCATCCCCAGTCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGATACTTTTTCTCCACTTAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCGATGCATCCCAAGTTCCAAGAAAGACTGCACAGAAAAATGATTGTAATGTTGGTCTGATGGATCCAAACTTGTATGGAGATGATGCTGGCTTGGGATTTGATTTGGAGACAGAAAACGAAGAAGACAATGAGAGTGAGCAGTAA 840 0.4393 MYHAKKFPQATMVPHKSQGGAEQLANVGVLNGSAVKNVAPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSNSGAESSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTASETFPLPHEKQNHPQSEPSGSSDALADTFSPLKKQRIDEGSKDGFDASQVPRKTAQKNDCNVGLMDPNLYGDDAGLGFDLETENEEDNESEQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01959 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 274 IPR044848 GO:0003700
Car03g01959 279 MobiDBLite consensus disorder prediction 106 123 - -
Car03g01959 279 SUPERFAMILY Homeodomain-like 45 100 IPR009057 -
Car03g01959 279 Gene3D - 45 104 - -
Car03g01959 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Car03g01959 279 MobiDBLite consensus disorder prediction 191 279 - -
Car03g01959 279 MobiDBLite consensus disorder prediction 191 215 - -
Car03g01959 279 MobiDBLite consensus disorder prediction 219 233 - -
Car03g01959 279 PANTHER OS05G0491500 PROTEIN 2 274 - -
Car03g01959 279 Pfam MYB-CC type transfactor, LHEQLE motif 134 180 IPR025756 -
Car03g01959 279 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Car03g01959 279 MobiDBLite consensus disorder prediction 105 135 - -
Car03g01959 279 Pfam Myb-like DNA-binding domain 49 99 IPR001005 -
Car03g01959 279 MobiDBLite consensus disorder prediction 265 279 - -
Car03g01959 279 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01959 Car-Chr3 65667885 65673065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01959 40 188 G2-like Transcription Factor Family AT3G13040 53.896 8.44e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car03g01959 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01959 - - gmx:100783132 446.047