Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01928 ATGACTTCACATAAGTTCAACATTGGTGTAGAAGGTTTCAATGGTGATATGGGTCTTTACCCTTTAGCTCCTATTCCTTCTTCTCATCTTGTGAATTCACAAACTCATCTTTTGACAAACACTGTTATGGTTCCAAAGCCTGAAATGGGTCTTCAGATTTTGAGACCCTCAACAATGTTTCAGTCCAAGGAAATCATGGGAACAAAGGAAGAAGACTTGTCTCTGAAACTTGGTGATGAGGTAGAAGACAAAAACTCTGTTTCTGTGAAAATTGGTTATTCCAAGCTTTGTTCTAGAGGTCATTGGAGACCAGTTGAAGATGCAAAACTTAAGGAACTTGTTGCTGAATATGGACCTCAAAACTGGAACTTGATTGCAGAACATCTTGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAATCAGCTAGACCCAAGGATAAACAGAAGGACATTTTCTGAGGAGGAAGAGGAGAGGCTTTTAGCTGCTCACAAAATGTATGGTAACAAATGGGCTATGATTGCTAGACTATTTCCAGGGAGGACAGATAATGCAGTAAAGAATCATTGGCATGTGATCATGGCTAGGAGACATAGGGAAAAGTGTAGTGTGTATAGAAGGAGAAAGCCACCAGCTGTTGAAAATCTTTCAAAGGGTTTAAAATTGAGTCTTTTGAACAATGCAGCTAGTGATTCAACTATCTCAAGTACCATAGATGATCAGAATCATCATGGCTTTGGATCATTAATGGGTCAATCTAGAGAAAGTGTGGTGGCAACAAGGGATGTGAGTTTTGACAAGTATTTTGGAGATTGTAATAAGCAAGAACAAGTGGAAAAGCTAATGGTCAAGGAAGTGGACCAGTCCAATTTTTCAGATTCAAACTCAGAAGTCTCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATCTCTCAATTTCTGGTGAAAGTGAAAATGTTGGTGCTGCTGTTAAGATTAACAACATGTTACCATTCATTGATTTTCTTGGAGTAGGAGCTATACAATAG 1035 0.3884 MTSHKFNIGVEGFNGDMGLYPLAPIPSSHLVNSQTHLLTNTVMVPKPEMGLQILRPSTMFQSKEIMGTKEEDLSLKLGDEVEDKNSVSVKIGYSKLCSRGHWRPVEDAKLKELVAEYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRTFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRHREKCSVYRRRKPPAVENLSKGLKLSLLNNAASDSTISSTIDDQNHHGFGSLMGQSRESVVATRDVSFDKYFGDCNKQEQVEKLMVKEVDQSNFSDSNSEVSVSESVATNRSNLSISGESENVGAAVKINNMLPFIDFLGVGAIQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01928 344 Pfam Myb-like DNA-binding domain 151 194 IPR001005 -
Car03g01928 344 Pfam Myb-like DNA-binding domain 99 145 IPR001005 -
Car03g01928 344 CDD SANT 162 193 IPR001005 -
Car03g01928 344 ProSiteProfiles Myb-like domain profile. 99 145 IPR001005 -
Car03g01928 344 SMART sant 150 198 IPR001005 -
Car03g01928 344 SMART sant 98 147 IPR001005 -
Car03g01928 344 PANTHER MYB PROTEIN-RELATED 65 342 - -
Car03g01928 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 145 IPR017930 -
Car03g01928 344 PANTHER OS08G0435700 PROTEIN 65 342 - -
Car03g01928 344 SUPERFAMILY Homeodomain-like 99 192 IPR009057 -
Car03g01928 344 ProSiteProfiles Myb-like domain profile. 146 196 IPR001005 -
Car03g01928 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 200 IPR017930 -
Car03g01928 344 Gene3D - 99 150 - -
Car03g01928 344 Gene3D - 152 217 - -
Car03g01928 344 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01928 Car-Chr3 65332605 65334784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01928 69 233 MYB Transcription Factor Family AT1G69560 61.878 1.46e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g01928 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01928 K09422 - gmx:100791795 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01928 03 65332605 65334784 Car03g01928 03 65332605 65334784 ECH