Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01916 ATGAGTGGTGAATGGTATGTGATACGCATGCATGAGATGGGAGAATACATATTCTACGACATGGTTTCAAGAGAAAGTGCAAAACATAATTGTTCAACAATAACACGAAGCTTTGAATGCCAGTTCTGCCAACGCAAGTTCTACTCTTCTCAAGCTCTTGGTGGCCACCAAAACGCACACAAACTCGAGAGAGCAGCTGCAAGGAGATCAATCAACAACAACTTTTCACTACCACctacaactacaactacaactacaactacaactTCTTCTCTCATAACCTACACCCACCCCAACCCTCAATTACAACATCATCTTCCTTTTCAGCCCCATGCTCACAATGCTCCACCTCCTCAACTGCTTCATGCTTCTCATCACCATGTCGATCTTGACCTCACCCTTCGCTTGTGA 411 0.4136 MSGEWYVIRMHEMGEYIFYDMVSRESAKHNCSTITRSFECQFCQRKFYSSQALGGHQNAHKLERAAARRSINNNFSLPPTTTTTTTTTTSSLITYTHPNPQLQHHLPFQPHAHNAPPPQLLHASHHHVDLDLTLRL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01916 136 Gene3D Classic Zinc Finger 19 90 - -
Car03g01916 136 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Car03g01916 136 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Car03g01916 136 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 110 IPR044246 GO:0009788
Car03g01916 136 SUPERFAMILY beta-beta-alpha zinc fingers 36 65 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01916 Car-Chr3 65253018 65253428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01916 36 98 C2H2 Transcription Factor Family AT5G14010 52.381 1.45e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01916 - - cam:101512387 275.789