Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01900 ATGCACAGTAACAACAACTCAGAAGGTAGCAGAAATAACAACAACAACACCACCACCACCATGAGCATTCTATCTTCTCGAACAAGCTCACGTTCCGTAACAGAAACCGTAAACGGTTCACACAAGTTCGTGATTAAGGGATACTCACTCGCAAAGGGAATGGGAGTTGGAAAACACATAGCAAGCGAGACTTTCACCGTCGGCGGTTACCAATGGGCAATTTACTTTTACCCCGACGGTAAAAATCCCGAAGACAACTCTGCTTATGTTTCCGTTTTCATTGCTCTTGCTTCTGAAGGTACCGATGTCCGTGCTCTTTTTGAACTGACTTTGCTTGATCAAAGTCCTAATGGGAAACATAAGGTTCATAGTCACTTTGATCGATCTCTTGAAAGTGGTCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGGTATAAGCGGTTTTTCAAACGTGCTCAACTTGAGGCTTCGTCCTTCCTTAAGGACGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTTGTGTCGTCCATAGATTGTTCTAAATTGAACACCATACATGTTCCTGAATCTGATATTGGATCGCATTTTGGCATGCTGTTAGAGAATGAGGAAGGATCTGATATTATTTTCTCTGTTGGTGGAGAAAGATTTCATGCACACAAGCTTGTTCTGGCTGCTCGGTCAACTGCATTTGAAAATGAGTTTTTCAATAAGATGGAGGAAGATGACTGTGATGTAGTTGTTACCGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCACTTTATTTATAGAGACGCTCTTATAGAAGATGAAGAGCTCTTTATGTCACGTTCATCGTTCTTGCCTTCAATATCTGAAACATTTGCCGCAAAATTATTAGCTGCTGCAGAAAAGTATGATTTGCCAAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGATATATCTATAGATTCTGTTGCCTATATTCTGGCGCTTGCTGATCGCTATAATGCTGCGGAGTTGAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAGTCTGATGGCTTTGAGTATCTAAAGGAAAACTGTCCATTGCTGCAATCAGAACTGCTTAAGACAGTTGCAGGATGCGAAGAGGAATTTAGTGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCAATTTTCCGATGGTGTTGAGGATAATGACAGGAGTGTAAGACAGCAAACATGGGAAAACGGAGTTGAAAGAGGTCAGAACTTATGGGTTAACCTTTCTGATGGCGTTAACAATGATAGGAGTCCAGGGCAAGAAGCTTGA 1329 0.4206 MHSNNNSEGSRNNNNNTTTTMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLNTIHVPESDIGSHFGMLLENEEGSDIIFSVGGERFHAHKLVLAARSTAFENEFFNKMEEDDCDVVVTDMEPKVFKALLHFIYRDALIEDEELFMSRSSFLPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKDISIDSVAYILALADRYNAAELKSICLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGVEDNDRSVRQQTWENGVERGQNLWVNLSDGVNNDRSPGQEA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01900 442 SUPERFAMILY TRAF domain-like 35 174 - -
Car03g01900 442 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 22 392 - -
Car03g01900 442 ProSiteProfiles MATH/TRAF domain profile. 38 172 IPR002083 GO:0005515
Car03g01900 442 MobiDBLite consensus disorder prediction 1 33 - -
Car03g01900 442 CDD BACK_AtBPM-like 316 377 IPR034090 -
Car03g01900 442 Gene3D Potassium Channel Kv1.1; Chain A 184 313 IPR011333 -
Car03g01900 442 Pfam BTB/POZ domain 200 317 IPR000210 GO:0005515
Car03g01900 442 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 37 176 IPR008974 GO:0005515
Car03g01900 442 SMART math_3 43 155 IPR002083 GO:0005515
Car03g01900 442 CDD MATH 39 172 IPR002083 GO:0005515
Car03g01900 442 ProSiteProfiles BTB domain profile. 208 274 IPR000210 GO:0005515
Car03g01900 442 CDD BTB_POZ_BPM_plant 194 316 - -
Car03g01900 442 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 22 392 IPR045005 GO:0016567
Car03g01900 442 SUPERFAMILY POZ domain 187 317 IPR011333 -
Car03g01900 442 Gene3D - 318 392 - -
Car03g01900 442 SMART BTB_4 208 319 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01900 Car-Chr3 65079667 65087109 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car03g01900 BTB 3.3e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01900 K10523 - gmx:100809683 786.178