Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01850 ATGGCAATTGCACGCACCGGAGTTTACGTCGACGACTATTTAGAGTACGCCAACACATTGCCCGCTGAGCTTCAGAGGCTTTTCAACACCGTTCGAGAACTCGACGAACGATCCCAATCTATGATAAACCAGACCAGGCAGCAAACAAAGTACTGTATGGGAGTCTCATCTCATGGCTCTAAGAAAGGTAATCATAATCATAATTATAATAACAGTTACGCGAATGAGGACGATGATGCTTCCATTGAGAAATTGCTTAAAGAAATTGAGGCAAATCAGGATAGTGCATTGAGTCTATGCACTGAGAAGGTTTTGTTGGCGCGGCAAGCATATGATCTGATAGATAGCCATGTAAAACGACTTGATGAAGATTTAAACAACTTCGCTGAAGATTTAAAGCAAGAGGGGAAAATACCACAAGATGAACCGGCCATTCTTCCCCCACTTCCTATTGTCCCTAAACCTGAAAAGCGCAGGCATGGATATGGCACACCTCAATCGAAGAGACTTGATTACAGAGATATAGACTTTGAGCTAATGCCTCCACCAGGAGGCCATAAGAAGGAGTATGTGACCCCTATGGATGTCGATCAACCAATTGATCCAAATGAACCTACATATTGTGTTTGTCATCAGGTATCTTTTGGAGACATGATTGCTTGTGACAACGAAAATTGCCGAGGAGGTGAATGGTTCCACTATTCATGTGTTGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACTACCACAATGTCAATGA 786 0.4288 MAIARTGVYVDDYLEYANTLPAELQRLFNTVRELDERSQSMINQTRQQTKYCMGVSSHGSKKGNHNHNYNNSYANEDDDASIEKLLKEIEANQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPQDEPAILPPLPIVPKPEKRRHGYGTPQSKRLDYRDIDFELMPPPGGHKKEYVTPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01850 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Car03g01850 261 PANTHER INHIBITOR OF GROWTH PROTEIN 2 257 IPR028651 -
Car03g01850 261 PANTHER PHD FINGER PROTEIN ING2 2 257 - -
Car03g01850 261 SUPERFAMILY FYVE/PHD zinc finger 183 256 IPR011011 -
Car03g01850 261 SMART PHD_3 207 255 IPR001965 -
Car03g01850 261 CDD ING_plant 19 125 - -
Car03g01850 261 CDD PHD_ING 207 254 - -
Car03g01850 261 MobiDBLite consensus disorder prediction 54 75 - -
Car03g01850 261 SMART ING_2 9 128 IPR024610 -
Car03g01850 261 Pfam PHD-finger 207 255 IPR019787 -
Car03g01850 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 256 IPR013083 -
Car03g01850 261 Gene3D - 5 126 - -
Car03g01850 261 MobiDBLite consensus disorder prediction 140 165 - -
Car03g01850 261 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 128 IPR024610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01850 Car-Chr3 64646988 64650133 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car03g01850 ING 9.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01850 K11346 - gmx:100787916 458.759