Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01843 ATGGAAGAACCAATAGTTGTTAATAAAGGTGAAGATCAAGGTCTTGATTTGCCACCAGGGTTCAGATTCCATCCAACTGATGAAGAGATAATAGTTTGTTATCTAACTGAGAAAGTCAAGAATAGCAAATTCAGTGCAACTGCTATTGGTGAAGCTGATTTAAACAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAAGAATGGTACTTTTTTTGTCAGAAAGATAGAAAGTATCCAACTGGGATGAGAACAAATAGAGCAACAGATTCTGGTTATTGGaaagcaacaggaaaagataaagagattttcaaaggaaaaggaaaCCTTGTTGGAATGAAGAAAACTCTTGTGTTCTATAGAGGTAGAGCTCCCAAAGGGGAAAAGACTAATTGGGTTATGCATGAATTTAGATTGGAAGGAAAATTTGCTAATTATCATCTTCCTAAAGCAGCTAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTTAAAAAGACACAAATTTCTGGTCTTTTAAGGATGAATTCAATTAATGATGATCTTCTAGATTATTCTTCACTTCCACCTCTAATGGATCCATCTTATACAAGTGATGAATTAAAAGGaatcactaatcaaatatcatcatctaaatcacaatcaGACGGCTATTATCTTCCAAGCTTTTCAATCAATAATCACAATCAACTTGTGATCAAGCCAGAAGATCATAACCATAGAAACTATGATCAGACTCAAACCATCATGAACTACACTTCCAATATTTCCAATTCCATTCAATCAAATCTCAACAACCCAATTGGAAACACACTCTCACAACCACAAATCCGAATCCAAAATCAAAACTTGAACTACTTTGTTTATCAACAAAATAGGATGCAAAATGTTAATTCTATCTCAAGTTTTGGAAACAACCATGATCAAGCTTTTGTAAGACCATTTGGAGCTAAGAATAATAGTGAGTGCAAAATGGAACAATTCTCTTCAAATCAATCACAAGATACAGGTCTTAGCAATGACACGTCATCAGCGGTATCCAAACAAGACATGGGAAGAAATAGGGCATTGTATGAAGATCTTGAAGGTCCATCTTCATCAGTTGCACCTCTCTCTGATTTGGAATGCTTGTGGGACTATTGA 1167 0.3359 MEEPIVVNKGEDQGLDLPPGFRFHPTDEEIIVCYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATDSGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFANYHLPKAAKDEWVVSRVFHKNTDVKKTQISGLLRMNSINDDLLDYSSLPPLMDPSYTSDELKGITNQISSSKSQSDGYYLPSFSINNHNQLVIKPEDHNHRNYDQTQTIMNYTSNISNSIQSNLNNPIGNTLSQPQIRIQNQNLNYFVYQQNRMQNVNSISSFGNNHDQAFVRPFGAKNNSECKMEQFSSNQSQDTGLSNDTSSAVSKQDMGRNRALYEDLEGPSSSVAPLSDLECLWDY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01843 388 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Car03g01843 388 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Car03g01843 388 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 343 - -
Car03g01843 388 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Car03g01843 388 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Car03g01843 388 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 343 - -
Car03g01843 388 MobiDBLite consensus disorder prediction 333 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01843 Car-Chr3 64580660 64582607 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01843 1 206 NAC Transcription Factor Family AT5G18270 73.832 5.96e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car03g01843 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01843 - - aprc:113861501 547.74