Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01806 ATGAACCCTTCAAAAGGTAAAAAGAAGCAaacgacaggaacaacaagtgaaacgacaacccaagaacaacaacaacaacaacaaACGGCATGGGGAGGTAGGTACTTAGGAGTTCGAAGAAGACCATGGGGAAGATACGCAGCCGAGATTAGAGACCCTTCTACGAAAGAAAGACACTGGTTAGGAACATTCGACACAGCCGAAGAAGCCGCTTTAGCTTACGATAGAGCCGCACGTGCCATGCGTGGTTCACGTGCTCGAACCAATTTTGTTTACGCTGATACCCCTCCCGGTTCTTCCGTTACTCCTATCCTCTCACCCGACCAACCGCAACAAACTTTTCACCATCATAATGTGCATGACCTTTCCTTCGTTCTTCAACCCGACCCGGTTCCTGTTAATTGTAACCCGGTTTCTGTTATAACTTCCTCTTCTTACGGTTACGGTTACGGGGAGGAAAATAATAATTATTTAAATAAATATAATAATATTCCTCCTCAACTTCCTGTTGCCACGTTGGAGGCTAGTTTTAAAAACAACAATAATGGAAATTCCCATTTTAACCAACAAGTTTTTTTTAACGATGATGTTAGTAGTTCTACTGCTACCAACAATATTAACAACACCAACAGCATAGAGCTTCCTCCATTGCCACCGGATATTAATAGTTCCACGTGCTATGATCAGGGTAATGCATTCAACGGTGGTGATGATGGGTATTATTATTGGGAGCAGAATAATAATCTAGCACCAGATTGTTATAACTTGCATAACAATATACAAATGTTGGGTACAGAAAATGTGGATGTTTTTGATTTCGGGAGTTCTTCATTTTTCTATTAA 843 0.3832 MNPSKGKKKQTTGTTSETTTQEQQQQQQTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARAMRGSRARTNFVYADTPPGSSVTPILSPDQPQQTFHHHNVHDLSFVLQPDPVPVNCNPVSVITSSSYGYGYGEENNNYLNKYNNIPPQLPVATLEASFKNNNNGNSHFNQQVFFNDDVSSSTATNNINNTNSIELPPLPPDINSSTCYDQGNAFNGGDDGYYYWEQNNNLAPDCYNLHNNIQMLGTENVDVFDFGSSSFFY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01806 280 MobiDBLite consensus disorder prediction 1 35 - -
Car03g01806 280 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Car03g01806 280 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Car03g01806 280 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 251 - -
Car03g01806 280 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Car03g01806 280 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Car03g01806 280 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Car03g01806 280 MobiDBLite consensus disorder prediction 1 32 - -
Car03g01806 280 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Car03g01806 280 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Car03g01806 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 8 251 - -
Car03g01806 280 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01806 Car-Chr3 64157432 64158748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01806 18 106 AP2-EREBP Transcription Factor Family AT5G13910 76.404 3.15e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g01806 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01806 K09286 - gmx:100792421 189.119