Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01781 ATGGAGCGTTACACGCTACCCTTACCACCCGGAGTTCATAACACTCTCACTATACCTTGGACAGAACCACAACAACTAACTTCATGGACCACACCTAACTCCGAACCTAAACACAACGACCAAGACATCGCCATTGCTATTGCCATGGGTTCCTCTCTCCCTTTCTTCAaacccgaaccacaacccgaacctgatatcaactactacaacatcaacaacagcgacaacTCTCCCTCCAACTACGTTCATGTTCCATTTGATTCAAATCCAACTAAAACAACTGATAACTTTCTCTTACACCAAAACACAAACACCATGGATGCATCAAATCCACACCCTTTTTTCcaaaacaacaacaactatttcttcaacaacaacaacaacaacaataacCCATTTGAAATGGGTTTCGAAAATGGTTTCTTTATGGGAAACAACAACACTTCAATTTCAAACACCTCTGTTTTCATGGGTGGGTCCCTCGAACTGAGTTCAGCTTCCGAGTTTCCACCGAGTCTCGAACTCGAAGcaccaccaccaccaccaccaGTAGTACCGTTTAACGCTTCTTTTTCGATGCCTCTTGAGTTGTCGCAACCGCAACAGCAACAACCTACGACACTGTTTCAGAAACGGAGAGGGGCGTTGGAGATTCCGAGGTTGGAGACAGTGGGgaacaagaagaagagaaaggtggagaagaaatgggaagaagaagggaatgaagTTGATGGTGATGTTGATGTTGATGATTTTTCAGGGTTGAATTATGATTCTGATGAGAATGGAAATGATTTGAACAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAAAAAGGGAAGAAGAAGAAGGGGCTGCCAGCGAAGAATCTCATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGACAGAGCTTCAATACTTGGAGATGCAGTTGACTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAACGAACTGGAATCAACTCCACCTGGCTCACTGCTGCCACCTTCTGCAACTGCAAGCTTTCACCCATTGACACCCACTCCACCAACCCTTCCCTGTCGAGTCAAGGAGGATCTATATCCAAGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGAAGACCGGGACTTTTGCTTTCTACCATGAGGGCTTTGGATACCCTTGGATTGGATGTTCAACAAGCTGTTATTAGCTGTTTCAACGGCTTTGCTTTAGATGTATTCAGAGCCGAGCAGCAATGCAGAGAAGGCCAGGATGTTCTTCCTGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCAGGCTACCATAGTATGAATTGA 1443 0.3964 MERYTLPLPPGVHNTLTIPWTEPQQLTSWTTPNSEPKHNDQDIAIAIAMGSSLPFFKPEPQPEPDINYYNINNSDNSPSNYVHVPFDSNPTKTTDNFLLHQNTNTMDASNPHPFFQNNNNYFFNNNNNNNNPFEMGFENGFFMGNNNTSISNTSVFMGGSLELSSASEFPPSLELEAPPPPPPVVPFNASFSMPLELSQPQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKKWEEEGNEVDGDVDVDDFSGLNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINDLHNELESTPPGSLLPPSATASFHPLTPTPPTLPCRVKEDLYPSDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDTLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGYHSMN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01781 480 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 479 - -
Car03g01781 480 MobiDBLite consensus disorder prediction 259 276 - -
Car03g01781 480 CDD bHLH_AtAMS_like 289 360 - -
Car03g01781 480 MobiDBLite consensus disorder prediction 259 288 - -
Car03g01781 480 PANTHER BHLH TRANSCRIPTIONAL FACTOR 82 479 - -
Car03g01781 480 SMART finulus 292 341 IPR011598 GO:0046983
Car03g01781 480 Pfam Helix-loop-helix DNA-binding domain 293 335 IPR011598 GO:0046983
Car03g01781 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 357 IPR036638 GO:0046983
Car03g01781 480 Gene3D - 278 349 IPR036638 GO:0046983
Car03g01781 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 335 IPR011598 GO:0046983
Car03g01781 480 CDD ACT_UUR-ACR-like 408 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01781 Car-Chr3 63709883 63713534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01781 61 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.966 1.22e-103 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g01781 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01781 - - mtr:MTR_7g083900 622.083