Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01744 ATGATATTAGACCCTGCACTTGGTTCATTTATTGGTGCTGATGCTGTATTTTTGGATACAACTTATTGTCACCCTAAGTTTGTTTTTCCTTCGCAAGACGAGTCTGTTAATTATGTTGTTGATGTTGTAAATCAGTGTGATGGTGGCGATGATGTGTTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATTTTGCTTGAGCTTGCTAGGAGGTTAGGAAAGAAGGTACATGTGGATGCTAGGAAAATGGAGGTTTTGGAGGCTCTTGGGTATGGAGAGAGTGGTGAGTTTACTGAGGATGTTTTACAGACTAATATTCATGTTGTTGGATGGAATGTGTTGGGGGAGACTTGGCCGTATTTTAGACCTAATTTTGTTAGGATGAAGGAGATTATGATTGAGAGGGGCTACTCAAAGGTTGTGGGTTTTGTGCCTACTGGCTGGACTTATGAAGTGAAGCATGGTAAGTTTGCTGTTAGGTCTAAGGATTCGTGTCGGATTCATCTTGTGCCTTATAGTGAGCATTCAAACTACGATGAGCTTAGGGAATATGTGAGGTTTTTGAAACCGAAGAAGGTTGTTCCGACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTAGGTTGGTTGATGAGACGGCTAACAAGAAAGAGTTTTTAAAGGGTTTTAAGAAGTGTGATTCCGGTGTAGTGGGTTTTGAGGCCGGTAAGGATGTTATTGATGATTCGGAACCAGGGCAGAGCATTGAGAAAGAAGTGAAGCCATCTGATACGGGAGAGGATAAAAGTATTAATCTGGATGTTGTTGCGAGTCTGTCATCTTCTACGGTAGAAACTTGCATACAAGATCCTATATTGCTAAATGATGAAGAAAAAGAGAAAGTCATTCAAGAAATTAGTTGTTGTTTGCCCACCTGGGTCACCCGAAGCCAGGTGTTAGATCTGATCAACATCTCTGGCAGCAATGTTGTTGAAGCTGTTTCTTATTTCCTTGAACGTGAAACTGAGTTTCACGAGCAAGTAAATTCCGGTCAATCTTCAGTTCCAACACCCAAGTGTTGCTCATCGAATGACACCAGTCCTATTTCAAAATCAAACATCAATACAAACACCACCTTCAAAAAACTGGACATTTTTCCAAGTCCAGACTCTAAATTCACTACCCTAAGGCACACATTACCAAATCACATTTCCCCTTCCAAAAGAAAGAGGAGAAGTGAAAGTAAGCCAAACAAGAAAGTAAATGTCAAAGCAAAATCAGAATCAAGTGGTTCAAAGCAGTCAACAATAACAAAATTCTTTAGCAAAGCAATGCCTAAGAATCCTAGTGATACCCAATCTGATCAATTTGGATCAAAACCCGATGAAAGCTCCAAAGTTGAAGAATTGTTGCCCACTGAGGCTGGGAACTTGTATAAGCATGAGATTGATCAGTTTATACAAATAATAAATGGGAACGAGTCATTAAAAACGCAAGCAATTACTATAATTGAGAAGGCAAAAGGAGATATCGATAAGGCATTGGATATATATTACTGCAATTCTTGCAATCTAGGTGAAAATGAGATATCAGTTCAAGGGGAAAGCAAAATTGACAGACCTTTAGAGAAGAAGCATGTGTCACAAGAGTTGAGAGTTATACCTGATATTTCTATGCATAAAGTGTTAAAAGATAATGTAGATGCAACTCATGTATCTCTACCATCTGAGAAATACAACCCCAAGGAACATGCGTGTTGGAGAGATGGACAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACCTGCTTGGGGATGAGAAAGGAAAGATAAAAGCTACTTCAATACTGTGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGACGTGCTTCCTGCTGTGTATCTATGTACACACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTTGAAGAGGCATGCGGGACAAATAGATTGAAAATAAGGGAGATGTATAACAAATTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTCGCACCGCCTACACCGCTTCTAATTAAGGATGTTTACTCTGCACTACGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTACGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATGAAGTTTCTTGTTCGGACCTTGATCAGGAACTTGAGGATCGGAGCAATGCTTAGAACTGTTTTGCCTGCATTAGCTCATGCTGTTGTTATGAATTCTTGTCCAAATGTGCAGCAAGAAGGAACAGCTGAAAATTTGAAGGCGACACTTCAGGTCCTTTCCGTGGCAGTTGTTGAAGCATATAACATAGTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCGAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATTACCAATGGCATTCCCCAAGCACTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTTGATGGATCAATTCGTGTTTTTTCAAGAAACGGAGATGAATCAACTTCGAGATTCCCTGATCTGATTGACATGATAACAGAATCTTGCAAGCCTGTTGCATCAACATTCATAATCGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGTTATCTTCACGCGGGAGAGGAGGCAAAGATACTTTAGTTACTAAAGAGAGCATAAAGGTGGGCATTTGCGTCTTTGTCTTCGATATCATGTTTGCAAATGGAGAACAGTTACTGGGTTTTCCTCTCCGCCTAAGGCGAAAGTATCTGAAGGATTTTTTCTATGATGAACGACCTGGGTATTTTGAATATGCAAAAGAAACAACTATTGAAGCAGATGATGCTTGCTTAACGTGTGAAGCCACATTAACTAAAGTAAATGCTTTCCTAGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAATCATTGGATATTGTAGCTGGGTATTCTCCATCAAGGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATATGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCATGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGAGTGATGTCTGGGTTCTCAGACTCATTTTACATAGAGCAGATGAAAGAATTCTTCTCTGGGGACAAAGTGTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCAGACATGTGGTTTTGTCCACAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATTAGATTTCCAAGGTTTATTAGCAGTGTGTCAGACAGAAACCCCGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCATTCGCAGAAACGGAAGATGGATGTCACAACTGAAGGTTGA 3690 0.3997 MILDPALGSFIGADAVFLDTTYCHPKFVFPSQDESVNYVVDVVNQCDGGDDVLFLVATYVVGKEKILLELARRLGKKVHVDARKMEVLEALGYGESGEFTEDVLQTNIHVVGWNVLGETWPYFRPNFVRMKEIMIERGYSKVVGFVPTGWTYEVKHGKFAVRSKDSCRIHLVPYSEHSNYDELREYVRFLKPKKVVPTVGLDVEKSDSKHVDKMRKYFARLVDETANKKEFLKGFKKCDSGVVGFEAGKDVIDDSEPGQSIEKEVKPSDTGEDKSINLDVVASLSSSTVETCIQDPILLNDEEKEKVIQEISCCLPTWVTRSQVLDLINISGSNVVEAVSYFLERETEFHEQVNSGQSSVPTPKCCSSNDTSPISKSNINTNTTFKKLDIFPSPDSKFTTLRHTLPNHISPSKRKRRSESKPNKKVNVKAKSESSGSKQSTITKFFSKAMPKNPSDTQSDQFGSKPDESSKVEELLPTEAGNLYKHEIDQFIQIINGNESLKTQAITIIEKAKGDIDKALDIYYCNSCNLGENEISVQGESKIDRPLEKKHVSQELRVIPDISMHKVLKDNVDATHVSLPSEKYNPKEHACWRDGQPAPYLHLARTFNLLGDEKGKIKATSILCNMFRSLLALSPEDVLPAVYLCTHKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVYSALRKISVQTGNGSTLRKKGIIVHLMRSCREKEMKFLVRTLIRNLRIGAMLRTVLPALAHAVVMNSCPNVQQEGTAENLKATLQVLSVAVVEAYNIVPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDESTSRFPDLIDMITESCKPVASTFIIDAEVVGIDRKNGYRIMSFQELSSRGRGGKDTLVTKESIKVGICVFVFDIMFANGEQLLGFPLRLRRKYLKDFFYDERPGYFEYAKETTIEADDACLTCEATLTKVNAFLEDALRSSCEGIMVKSLDIVAGYSPSRRSDKWLKVKRDYMEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEQMKEFFSGDKVLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSVSDRNPEECSTAADIVEMFHSQKRKMDVTTEG 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01744 1229 Gene3D - 28 177 - -
Car03g01744 1229 ProSiteProfiles ATP-dependent DNA ligase family profile. 956 1103 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car03g01744 1229 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 399 1227 - -
Car03g01744 1229 Pfam ATP dependent DNA ligase domain 845 1065 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Car03g01744 1229 Gene3D - 576 847 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car03g01744 1229 MobiDBLite consensus disorder prediction 352 379 - -
Car03g01744 1229 CDD Adenylation_DNA_ligase_I_Euk 836 1068 - -
Car03g01744 1229 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 578 828 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car03g01744 1229 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 801 1067 - -
Car03g01744 1229 Gene3D - 856 1069 - -
Car03g01744 1229 Gene3D - 1070 1228 IPR012340 -
Car03g01744 1229 MobiDBLite consensus disorder prediction 408 422 - -
Car03g01744 1229 Pfam DNA ligase N terminus 599 775 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Car03g01744 1229 Gene3D - 4 199 IPR036866 -
Car03g01744 1229 SUPERFAMILY Nucleic acid-binding proteins 1074 1219 IPR012340 -
Car03g01744 1229 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 657 1216 IPR000977 GO:0003910|GO:0005524|GO:0071897
Car03g01744 1229 PANTHER DNA LIGASE 3 399 1227 - -
Car03g01744 1229 SUPERFAMILY Metallo-hydrolase/oxidoreductase 11 200 IPR036866 -
Car03g01744 1229 Pfam ATP dependent DNA ligase C terminal region 1091 1196 IPR012309 GO:0003910|GO:0006281|GO:0006310
Car03g01744 1229 MobiDBLite consensus disorder prediction 397 472 - -
Car03g01744 1229 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 869 877 IPR016059 GO:0003909
Car03g01744 1229 MobiDBLite consensus disorder prediction 429 465 - -
Car03g01744 1229 Gene3D DNA ligase/mRNA capping enzyme 874 1005 - -
Car03g01744 1229 Pfam DNA repair metallo-beta-lactamase 97 200 IPR011084 -
Car03g01744 1229 CDD OBF_DNA_ligase_I 1074 1218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01744 Car-Chr3 63264433 63279492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01744 584 1220 Core DNA Replication Machinery Family AT1G08130 39.124 3.89e-167 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01744 - - gmx:100807673 1993.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01744 03 63264433 63279492 Car03g01744 03 63264433 63279492 ECH