Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01721 ATGGCCGATGACGAATACCATGGAAATTCCAATACTACCCCTACTAACAACACCCCATCTCTAAAGCTATTTGGCATCAACCTTCAAGAAGCAGCTAGATTGAATCAATCTCCATCATCAGAATCTGAGGCTCTGAATGGTACAAAATACGAATGCCAATACTGCTGTAGAGAATTCGCAAATTCACAAGCATTAGGAGGACACCAAAACGCACACAAAAAAGAAAGACAACTCTTGAAACGTGCTCAAATGCAAGCTGCTCGTGGCTTCGTTAATGCTTCACATATGCATAACACATTTATGTCACCTCCGCCGCAGCATCATTTAATCGCCGGTGGTCTACCGTCTCAGCCACCTTTGTCTTCGTGGCTATACACAACGCATGCTTTAGTTGCCGCTTACGAACAATTTGAAGTGGCACTGAAGGCGAAGGAGAATTCAGAAACGGTTCTTACCAAAATTCGGGTTTGGATACATTGTGGCTGTTGTCAATTATATGATAATCATGATTTGTTTCCTAATCACTGTTTAATTTATCCTTTCTTTTTCAACAGATCAATGTTGCATATTGCATCTTCCCCAGCCTTATCCTTAACCTATCCCAGGAGAAACCTTCATTATCGTCATTATTCAACAAAGCCTTTAGTTAAAACAACTTTTTCTGTTCGTTGTTCGGTGCCACAGACAAATAAAGTTGAATTTACTCCTTGGCTCATTGTTGGTTTGGGTAACCCTGGAAATAAATACCATGGCACTAGGCACAATGTTGGATTTGAAATTATTGATAGCCTTTCTCAAACAGAAGGCATTCTCATGAATACAATACAGTCAAAAGCATTGATTGGAATAGGTTCTATAGGAGAAGTACCGGTTTTGCTGGCAAAGCCTCAAACATACATGAATTTTAGTGGGGAATCGGTTGGACCACTTGCTGCATATTATCGAGTACCTTTGCGTCATATTCTACTAGTTTATGATGAAACTAGCCTTCCAAATGGTGTTTTAAGACTTACACCTAAAGGTGGACATGGGCATCACAATGGATTGAAAAATGTGATAGGCCATTTGGATGGTTCCCGTGATTTTCCTCGACTTGCAATTGGAATTGGAAATCCTCCTGGAACTATGGATTTAAGAGCATTTCTTCTACAAAAGTTTAGTTCAGTGGAAAGAAAGCAGGTTGATGAATCATTGGAGCAAGGAGTTCAAGCTGTTAGGACCTTAGTGCTCAATGGGTTTAATCACCATGTCAATAGATTCAATTTAGGGCAAAAATACAAGTACAATAAAGTTTAA 1296 0.3958 MADDEYHGNSNTTPTNNTPSLKLFGINLQEAARLNQSPSSESEALNGTKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVNASHMHNTFMSPPPQHHLIAGGLPSQPPLSSWLYTTHALVAAYEQFEVALKAKENSETVLTKIRVWIHCGCCQLYDNHDLFPNHCLIYPFFFNRSMLHIASSPALSLTYPRRNLHYRHYSTKPLVKTTFSVRCSVPQTNKVEFTPWLIVGLGNPGNKYHGTRHNVGFEIIDSLSQTEGILMNTIQSKALIGIGSIGEVPVLLAKPQTYMNFSGESVGPLAAYYRVPLRHILLVYDETSLPNGVLRLTPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVRTLVLNGFNHHVNRFNLGQKYKYNKV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01721 431 TIGRFAM pth: aminoacyl-tRNA hydrolase 238 421 IPR001328 GO:0004045
Car03g01721 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Car03g01721 431 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Car03g01721 431 Gene3D - 223 424 IPR036416 GO:0004045
Car03g01721 431 Pfam Peptidyl-tRNA hydrolase 238 421 IPR001328 GO:0004045
Car03g01721 431 PANTHER CHLOROPLASTIC GROUP IIB INTRON SPLICING FACILITATOR CRS2-B, CHLOROPLASTIC 208 430 - -
Car03g01721 431 CDD CRS2 235 425 - -
Car03g01721 431 Gene3D Classic Zinc Finger 31 100 - -
Car03g01721 431 SUPERFAMILY Peptidyl-tRNA hydrolase-like 235 421 IPR036416 GO:0004045
Car03g01721 431 PANTHER PEPTIDYL-TRNA HYDROLASE 208 430 IPR001328 GO:0004045
Car03g01721 431 Hamap Peptidyl-tRNA hydrolase [pth]. 236 414 IPR001328 GO:0004045
Car03g01721 431 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 249 262 IPR018171 GO:0004045
Car03g01721 431 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 342 352 IPR018171 GO:0004045
Car03g01721 431 MobiDBLite consensus disorder prediction 1 21 - -
Car03g01721 431 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01721 Car-Chr3 63079537 63084888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01721 18 128 C2H2 Transcription Factor Family AT1G67030 53.488 1.97e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01721 K01056 - gmx:100804132 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01721 03 63079537 63084888 Car03g01721 03 63079537 63084888 ECH