Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01712 ATGGCTTCCACCACCCAACACTCAGATTTTGCATACTTGGAAAACATTCAACAATACCTTCTTCACGATGATTCCAACATTCTTACATCTCATCAAACTTTTTCAAGCCCTAAAAGTGACAATGATTCATATACAACTATAGAGACGCGTGAAGTAAACGCGCCTCCAACATGGAAGCGGTATAAGGGTGTGAGGCGTAGACCATGGGGAAAGTTTGCCGCAGAGATTAGAGATCCCAAGAAAAATGGCGCTAGAGTTTGGCTTGGAACTTATGTCACTGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTTAAAATGCGTGGCCGAAAAGCCAAACTTAATTTTCCCCACCTTATTGGCTCTGACGTGCCAACGTCAAAGCCAGAAAGGGAGGTGGTTTTGAAACGAGACTCGCCAGAGCCTTCTTCTTCGGAGGAAAGTTGTGAGTCATCGTCACAAGGGTCAAAGAGAAAAAGGAGCATGGTTGACTTACTTAACAAATTAGCCAAGAATAGAAGCCAAGCCATGGTGGTTGAAATTGAAAAGGCTTCACAAGCAAATTTTTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTCTAATTAATATGGAGCTCTTAGTGTAG 633 0.4297 MASTTQHSDFAYLENIQQYLLHDDSNILTSHQTFSSPKSDNDSYTTIETREVNAPPTWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIGSDVPTSKPEREVVLKRDSPEPSSSEESCESSSQGSKRKRSMVDLLNKLAKNRSQAMVVEIEKASQANFFEQWVNELNDCTLINMELLV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01712 210 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Car03g01712 210 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Car03g01712 210 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Car03g01712 210 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Car03g01712 210 MobiDBLite consensus disorder prediction 130 145 - -
Car03g01712 210 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Car03g01712 210 MobiDBLite consensus disorder prediction 146 161 - -
Car03g01712 210 PANTHER DNA-BINDING DOMAIN 1 176 IPR044808 GO:0003700|GO:0009873
Car03g01712 210 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Car03g01712 210 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Car03g01712 210 MobiDBLite consensus disorder prediction 122 162 - -
Car03g01712 210 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 176 - -
Car03g01712 210 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01712 Car-Chr3 63006027 63006942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01712 60 148 AP2-EREBP Transcription Factor Family AT2G44840 70.787 5.19e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g01712 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01712 K09286 - gmx:102663872 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01712 03 63006027 63006942 Car03g01712 03 63006027 63006942 ECH
Car07g03385 07 61970492 61971290 Car03g01712 03 63006027 63006942 PCT