Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01704 ATGAGGCCTATTCTGATGAAAGGCCATGAGAGGCCATTAACGTTCCTCAAATACAACAGGGATGGCGATCTCCTCTTTTCTTGCGCCAAAGACCACAACCCCACCGTCTGGTTTGCTGACAACGGAGAACGTTTGGGCACTTATCGTGGCCATAATGGCGCTGTTTGGTGCTGCGATGTATCAAGAGATTCTGGTCGACTAATTACCGGAAGTGCTGACCAGACGGTGAAGCTATGGAATGTGCAAAGTGGTCAACAATTGTTTACCTTCAATTTTGATTCCCCTGCAAGGTCTGTTGACTTCAGCGTCGGTGATAAGCTTGCAGTTATTACTACTGACCCGTTTATGGAACTCACTTCAGCAATCCATGTCAAACGCATTGCTAAAGATCCTGCAGACCAGACTGGCGAATCTTTGCTTGTCATTAAGGGTCCTCAAGGAAGAATCAATAGAGCCATTTGGGGACCCCTCAATAGAACCATTATCAGTGCTGGAGAAGACTCCGTCGTTCGTATTTGGGATTCTGAGACCGGGAAACTACTTAAGGAGTCTGACAAGGAATCAGGACACAAGAAGACAGTAACATCACTTGTTAAATCTGCTGACGGGTCGCACTTCCTCACGGGATCCCTGGATAAGTCTGCTAAGCTTTGGGATGCCAGAACATTGTCTCTTGTCAAGACATATGTGACAGAACGGCCTGTCAATGCAGTGGCAATGTCACCTCTACTTGATCATGTGGTACTTGGAGGTGGCCAGGATGCATCGGCTGTTACAACTACTGATCACCGTGCTGGAAAATTTGAAGCCAAGTTCTTCGATAAGATTCTTCAAGAAGAAATTGGGGGCGTGAAAGGTCATTTTGGACCAATTAATGCACTGGCCTTTAACCCTGATGGAAGAAGTTTTTCAAGTGGAGGTGAAGATGGATACGCGTATGAAGGAAGCCAAGAGGAATTAAGGGACTTCAATCTGGATATGGAAATGAAGCATGTGAAGAATTTTCATTATGTTGTTGTGAATGCTAAGGATAAGCTTGAGAATGCTGTGAAATTGTTGGAGTCTATTCTTGATGCTGAGAAACCTAAGGAATGTGTACTTAGAATTGATACCGCACATGGATGGGAAAATTCTGTGACTAAAGTTTTGGAAACCTTTGAAGACTTAAGTTACGAGATTAATCCATCAGCTGGATTCATTTACGTGAAAGGCAAAACACATCCACAACAAATTTTATGGTACCTAAAGAGGAGTGGAAAACATGCTACAATTGAATGGATTAGTTATGGTTTTCCAAGAGAAGATCCACAACAAAACCAAATGCAAGATCAAGGAAATTGTCCTAACAATTTAATTCCTTATTATGATCCATTTTATTATGCTAGATATCCTTATGATCCAAATTGTTCTCAACTCAATCATCCTTACCTTAATTGGTACAACATGCCACAAAATCCTTTTCCCTATGGAAATCATCATGTTCCTCCTGAACCTCAACATAATGGACACATGATTGAAGGTAGAAGCTTCTCAAATAGATCATTTGATTCTCATTGTCCAGTGCGTTCACGATATCATCACTCTCCTGATTCACGGTCGCCGCCGCCGCCAGCATTTGTTCAGCAACAAACCAATGATCAAACAAGTTTTCAACCTTCCCAAGAATCTTCTTTTTTCAAGAAAGTTGCTGACAAGTTTTGCTTTTCTTGTTAA 1713 0.4209 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSGRLITGSADQTVKLWNVQSGQQLFTFNFDSPARSVDFSVGDKLAVITTDPFMELTSAIHVKRIAKDPADQTGESLLVIKGPQGRINRAIWGPLNRTIISAGEDSVVRIWDSETGKLLKESDKESGHKKTVTSLVKSADGSHFLTGSLDKSAKLWDARTLSLVKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGRSFSSGGEDGYAYEGSQEELRDFNLDMEMKHVKNFHYVVVNAKDKLENAVKLLESILDAEKPKECVLRIDTAHGWENSVTKVLETFEDLSYEINPSAGFIYVKGKTHPQQILWYLKRSGKHATIEWISYGFPREDPQQNQMQDQGNCPNNLIPYYDPFYYARYPYDPNCSQLNHPYLNWYNMPQNPFPYGNHHVPPEPQHNGHMIEGRSFSNRSFDSHCPVRSRYHHSPDSRSPPPPAFVQQQTNDQTSFQPSQESSFFKKVADKFCFSC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Car03g01704 570 Gene3D - 1 337 IPR015943 GO:0005515
Car03g01704 570 CDD WD40 7 310 - -
Car03g01704 570 MobiDBLite consensus disorder prediction 537 555 - -
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Car03g01704 570 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 311 - -
Car03g01704 570 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 311 - -
Car03g01704 570 MobiDBLite consensus disorder prediction 520 555 - -
Car03g01704 570 SUPERFAMILY WD40 repeat-like 4 312 IPR036322 GO:0005515
Car03g01704 570 SMART WD40_4 1 38 IPR001680 GO:0005515
Car03g01704 570 SMART WD40_4 135 174 IPR001680 GO:0005515
Car03g01704 570 SMART WD40_4 41 80 IPR001680 GO:0005515
Car03g01704 570 SMART WD40_4 177 219 IPR001680 GO:0005515
Car03g01704 570 SMART WD40_4 277 316 IPR001680 GO:0005515
Car03g01704 570 SMART WD40_4 222 261 IPR001680 GO:0005515
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Car03g01704 570 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Car03g01704 570 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 318 IPR027525 GO:0003743|GO:0005737|GO:0005852
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 310 IPR001680 GO:0005515
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Car03g01704 570 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Car03g01704 570 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Car03g01704 570 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Car03g01704 570 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Car03g01704 570 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Car03g01704 570 Pfam WD domain, G-beta repeat 283 311 IPR001680 GO:0005515
Car03g01704 570 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Car03g01704 570 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01704 Car-Chr3 62896746 62907923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01704 1 312 Eukaryotic Initiation Factors Gene Family AT2G46290 79.936 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01704 K03246 - gmx:100793485 612.068