Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01686 ATGCCTCCGAAAGTGGTAAAAAGAGGTGATGCGGCGAGGAAAACGAGGGTTTCTTCAAAAGCTGCAATTCAGAATCAGCAGCAAGAACCTGAACCTGATCCTGTCAAGAATCCTATTGCTGGTGTTGTGGTGGAAGAGAACACCGTTGATACAAACAATTTGGCTCCAGAGACGTTGCCCAATGGTTTGGTTGTTGTGGAAAACAATGGAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAGGATGAGCACTTAGATTTGGAGGATAATTACCATGAGTATGAACCTGAGGAGTATGTTGGTGTTGACTATGATGAGCGGGGAATTGAACAAGTTGAGGGTCaggaggaggaggtggtagatgaagtggaggaagaACCTGAAGAGTATGTGGATGAAGAACCTGAAGAGTATGTGGATGAAGAACCTGAAGAGTATGTGGATGAAGAGGAGTGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGGTGATGATGCCGATGCTGGTGATGATGAGCATGCTGGTGAGGAGAACGACCATAAGCATATGGCTGATGTGGAGCAAGAGGAACACGGTGGAGTTAGAAAGGAGAGGCAGAAGCAGAAGGAATTTGAAGTATTTGTCGGGGGCCTAGACAAGGATGCGACAGAGCATGATCTGAGGAAGGTTTTCGGCAAGGTTGGGGCAATCTCTGAAGTCAGGCTGATGATGAATCCTGAGACTAAAAGGAACAAGGGATTCGCATTATTGCGTTTTGAAACTGCCGAACAAGTGAAAAGAGCATTGGCGGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTATCACTCCATGTCAGGACAGTGATACTCTCTATTTAGATAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAGCAATGAGGGAATGAACTGTGGATTTGCATTTTTGGAATTTTCAATCTGCTCAGATGCTAAGGAGGCCTACAAGCAATTGCAGAAGAGAGACATTGTTTTCGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGTTGACCAGGGTGATGAAATCATGGAACAGGTTAAAACTATATTTATTGATTTACTGCCTCCTTCATGGGATGAAGATTATGTCCGAAGTCTTCTTAAGAAATATGGGGAGGTTGAAAAGGTTGAGCTTGCTAAGAACATGCCAGGTGCTCGTAGGAAGGATTATGGATTTGTTACATTTACTACGCATGCTGCTGCTGTGGAATGTGCTGATAGCATTACCAGTGCAGGGTTAGGTGAAGGCAACAAAAAGGCAAAAGTTAGGGCTAGATTGTCAAGACCTCTTCCGAAAAGTCGTGGAAAATATGTTATTCGTAGGGACTTTTCTGGCCACAAGTTAGGAAGATTGGCAAAGCCTTCACGGCTTCGACCTGCACCACGGGGTCGACCTGCACCACATAGTCGACCTGCTCGTGTGGTGAGAAGATTCGGAAATCGCATTCCAGCAGTTAGACCTTCTAGCATGAGAAATAGACGTCCGGTCGCATCCATACCAGTACGAGCTAGGCCAGTCACTCCTCCAGCTAGATCCTTTGACAGGAGATTGGCCGCTGCACATCCAAAAAGCAGCATGAAGAGAGATTATGGTCGAGCTGCGGATCTACCACCTCTAAGAAGTAGAGTTTCCCCAGATTATGGCTCTCGGGTGGCTTCTCAAAGGCGTCCATCTTATAGAGAATATCCAGCCCGTGACTCTGGCTACCCTGACCTACATAGGAATACATCTCGAAGTGCACCAAGGATGGATTACCTGGATGATGGCTATGACCGTAGACTTGAGAGGCCTCCTCCACCTCTCCATCTAAGTTACCGTGAAGGACGCTCTCGTGTTTATGACACACTATCTGGCTCAAAACGTCCTTATGCTGCAACAGACGATATTTCTCCACGATATGCTGATGCCAGTGCTCGCCAATCAAGATCTCGTTTAGATTATGATTATGGAGGTAGTGCTTCAAAATATAAAGAGGCTTATGGTGATAGGCTTGGAAGATCTAGTTTGGGATATAGTGGCAGTAGAAGTTCTATATCTATTCAAAATTCACACGAGACATATAGCAGTCGACAAGACACAAGTTACGGTGGAGGTTCTCTTGGTCGTAGTGATGGGGTTATCTACTCATCAAGTTATGGTAGCGGTTACTTATCTCGTGGAAGCGATGTTGGTGGTAGCTCGTATTCGGCCATGTATTCTGGCAGGGGTATGAACAGTAATAGAAGTTATATCGGTAGTGGCAGTGGTGGATCTAGGTCTTATTATTGA 2376 0.4381 MPPKVVKRGDAARKTRVSSKAAIQNQQQEPEPDPVKNPIAGVVVEENTVDTNNLAPETLPNGLVVVENNGEEVKESIDEYEKDEHLDLEDNYHEYEPEEYVGVDYDERGIEQVEGQEEEVVDEVEEEPEEYVDEEPEEYVDEEPEEYVDEEECDTGDEEVEYVYEEVEGDDADAGDDEHAGEENDHKHMADVEQEEHGGVRKERQKQKEFEVFVGGLDKDATEHDLRKVFGKVGAISEVRLMMNPETKRNKGFALLRFETAEQVKRALAELKNPVINGKQCGITPCQDSDTLYLDNICKTWKKEALKEKLKHYGVESFKDLTLVEDGSNEGMNCGFAFLEFSICSDAKEAYKQLQKRDIVFGVDKPAKVSFVDQGDEIMEQVKTIFIDLLPPSWDEDYVRSLLKKYGEVEKVELAKNMPGARRKDYGFVTFTTHAAAVECADSITSAGLGEGNKKAKVRARLSRPLPKSRGKYVIRRDFSGHKLGRLAKPSRLRPAPRGRPAPHSRPARVVRRFGNRIPAVRPSSMRNRRPVASIPVRARPVTPPARSFDRRLAAAHPKSSMKRDYGRAADLPPLRSRVSPDYGSRVASQRRPSYREYPARDSGYPDLHRNTSRSAPRMDYLDDGYDRRLERPPPPLHLSYREGRSRVYDTLSGSKRPYAATDDISPRYADASARQSRSRLDYDYGGSASKYKEAYGDRLGRSSLGYSGSRSSISIQNSHETYSSRQDTSYGGGSLGRSDGVIYSSSYGSGYLSRGSDVGGSSYSAMYSGRGMNSNRSYIGSGSGGSRSYY 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01686 791 MobiDBLite consensus disorder prediction 484 506 - -
Car03g01686 791 MobiDBLite consensus disorder prediction 179 204 - -
Car03g01686 791 SUPERFAMILY RNA-binding domain, RBD 290 442 IPR035979 GO:0003676
Car03g01686 791 MobiDBLite consensus disorder prediction 552 571 - -
Car03g01686 791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 374 IPR000504 GO:0003723
Car03g01686 791 MobiDBLite consensus disorder prediction 595 638 - -
Car03g01686 791 Gene3D - 374 473 IPR012677 -
Car03g01686 791 MobiDBLite consensus disorder prediction 171 204 - -
Car03g01686 791 MobiDBLite consensus disorder prediction 1 38 - -
Car03g01686 791 Gene3D - 152 284 IPR012677 -
Car03g01686 791 SUPERFAMILY RNA-binding domain, RBD 211 314 IPR035979 GO:0003676
Car03g01686 791 Gene3D - 290 373 IPR012677 -
Car03g01686 791 SMART rrm1_1 384 459 IPR000504 GO:0003723
Car03g01686 791 SMART rrm1_1 211 284 IPR000504 GO:0003723
Car03g01686 791 SMART rrm1_1 291 370 IPR000504 GO:0003723
Car03g01686 791 Coils Coil 63 83 - -
Car03g01686 791 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 135 - -
Car03g01686 791 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 138 791 - -
Car03g01686 791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 358 IPR000504 GO:0003723
Car03g01686 791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Car03g01686 791 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 385 442 IPR000504 GO:0003723
Car03g01686 791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Car03g01686 791 PANTHER RNA RECOGNITION MOTIF 138 791 - -
Car03g01686 791 PANTHER RNA RECOGNITION MOTIF 1 135 - -
Car03g01686 791 MobiDBLite consensus disorder prediction 538 688 - -
Car03g01686 791 MobiDBLite consensus disorder prediction 115 156 - -
Car03g01686 791 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 383 465 IPR000504 GO:0003723
Car03g01686 791 MobiDBLite consensus disorder prediction 707 736 - -
Car03g01686 791 MobiDBLite consensus disorder prediction 18 32 - -
Car03g01686 791 CDD RRM_SF 385 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01686 Car-Chr3 62553239 62558809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01686 212 444 Eukaryotic Initiation Factors Gene Family AT4G34110 21.951 9.77e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01686 - - gmx:100811387 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g03354 07 61593468 61599795 Car03g01686 03 62553239 62558809 PCT