Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01679 ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTTCAACGCCCTGACCTTGAAGTTCATGATGAGAGTCAAGACCAAGATCATGGAAATAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCAAGGTCTCGGCGACGTTGTCGGACGTAGACCAAGGGGAAGACCTCCAGGCTCAAAGAACAAACCTAAACCACCTGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCATATCCTTGAAGTTAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGGAAGCGTCAAAGAGGGATCTGTGTCCTTAGTGGTAGTGGAACAGTCACTAACGTGATCCTACGGCAGCCAGCTGCTGCAGGGTCTGTAGTGACTCTCCACGGAAGATTTGAGATATTATCTTTGTCTGGATCATTTCTACCTCCCCCGGCTCCACCAGGCGCTACTAGTCTGAGTGTATTCCTTGGGGGAGGTCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGGTTGCATCTGGACCGGTTATTGTTATCGCTTCATCTTTCACTAACGTAGCTTATGAGAGGTTACCGTTGGAAGAAGATGAATCTCTTCAGATGCAACAAGGACAATCTTCTACAggtggtggtggtggcggtgatggtgTTAATAACTCTTTTCCTGACCCATCTTCAGGGCTTCCATTCTTCAATTTGCCTCTAAATATGCCTCAATTACCTGTTGATGGTTGGGCTGGAAATTCTGGTGGAAGACAATCTTATTGA 804 0.4465 MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDHGNNNHEGLDLVSPNQGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVILRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLEEDESLQMQQGQSSTGGGGGGDGVNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01679 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Car03g01679 267 Gene3D - 83 218 - -
Car03g01679 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 267 IPR014476 GO:0003680
Car03g01679 267 MobiDBLite consensus disorder prediction 208 244 - -
Car03g01679 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 267 - -
Car03g01679 267 MobiDBLite consensus disorder prediction 24 73 - -
Car03g01679 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 212 - -
Car03g01679 267 ProSiteProfiles PPC domain profile profile. 80 216 IPR005175 -
Car03g01679 267 CDD DUF296 84 166 IPR005175 -
Car03g01679 267 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01679 Car-Chr3 62488876 62490895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01679 1 264 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.452 1.99e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01679 - - gmx:100803960 412.535