Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01653 ATGGCCTCTATGAACTTGTTAGGTTTCTCTCTCTCTCCACAAGAACACCCTTCAACTCAAGATCAAACGGTGGCTTCTCGTTTTGGATTCAACCACCCTGATGGAATCTCAAGTTCTAATCAAGTACAACAAGATCAGTGCTTTGatctctcaactcctcatcactcttcactcaaccacctttctcatcCTTTTTCCATTTATGAAGCTTTCCACACAAATAACAACATTCACACCACTCAAGATTGGAAGCAGAACTACAACAACCAAAACCTACTATTGGGAGCTTCATGCATTAATCAAAATGCGAACAACAACCATCAACAAGTTCAACCAAAGCTAGAAAACTTCCTTGGTGGACACTCTTTTACAGACCATCAAGAATACGGCAGCAACTCAGTTGTGTCGCCGTATTCTTCAATACAGCTTCCGGTTCAGTCGGAAGCTGTATGTGGTGATGGAAACACAAGCAACACAAACTCCATAGGTTTGTCAATGATAAAAACATGGCTAAGAAACCAACCACCACCAGAAAACAACAATAATGAAAGTGGAGGGCGTGTGCAAACTCTATCACTTTCAATGAGTACTGGTTCACAGTCAAGTTCATCAGTTCCTCTTATCAATGCAAATGTGAGTGGTGAGATCAGTTCATCATCGGAAAACAAACAACCTCCGGCAACTACAACGGCGGCACTTGATAGCAACCAAAGTGGTGTCAATGAAAATACTGTGCCTAGAAAGTCCATTGATACATTTGGTCAAAGAACTTCCATATACCGTGGTGTAACAAGGCATAGATGGACAGGGAGATATGAGGCTCATCTTTGGGACAATAGTTGTAGAAGAGAGGGGCAAACTCGTAAAGGAAGACAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACTACAACAAATTTTCCCATTAGCCATTATGAAAAAGAATTGGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTTGCGTCATTGAGAAGGAAAAGTAGTGGTTTTTCTCGCGGTGCATCCATTTACCGAGGAGTAACAAGACATCATCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACCTAGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATACGATGTAGCAGCCATAAAATTCAGAGGACTAAGTGCAGTGACAAACTTCGACATGAATCGATACGATGTGAAAAGCATACTTGAAAGCAGCACTTTACCGATTGGTGGTGCTGCAAAGCGTTTAAAGGACATGGAGCAAGTAGTTGAATTGAATGTGGATAATGTCCATAGAACAGAACAAGATCATAGTACAACcatcatcaacacttcacatttaactgatcatcatcaaaccatcaataacaacaacaacaacaacaacTATGGAGCTTGGCATGGTCTATCATTCcaacaacaacatcatccttacaatactacaaccaacaacaacaTGCAATTACATAATTACACTTATGGTACTCAAACTCAAAAGCTTTGGTGCAAACAAGAACAAGATTCTGATGATCATCATAGTTATGATCACATTCATCATCAACTACAGTTAGGGAACAGTAACAATAACAGCACTCACAATTTCTTTCAACCAAATTCTGGTTTACAAAATATGATGAACATGGATTCTGGTTCAATGGATAATAACAGTTCTGCATCTAACTCTGTTGTTTATGGTGGTGATCATGGTAATAATGGTTATGGTGGGAGCTATATGATTCCAATGGTTAATGAGAATGAGATAAAGGGATTTGGTTATGAGAATGTTTTTGGAACAAGTGATCCTTATCATGCACATGCAAGGAATTTGTATTATCAGCAACAATTAACGGTTGATCAAGGAGGGTCAAATAGCAATAATAATAATAATTGGGTTCCAACTGCAATTCCAACAATTACACCAAGGACTACTAATGTGTCTCTTTGTCCACCATTCACTTTGTtgcatgaatga 2052 0.366 MASMNLLGFSLSPQEHPSTQDQTVASRFGFNHPDGISSSNQVQQDQCFDLSTPHHSSLNHLSHPFSIYEAFHTNNNIHTTQDWKQNYNNQNLLLGASCINQNANNNHQQVQPKLENFLGGHSFTDHQEYGSNSVVSPYSSIQLPVQSEAVCGDGNTSNTNSIGLSMIKTWLRNQPPPENNNNESGGRVQTLSLSMSTGSQSSSSVPLINANVSGEISSSSENKQPPATTTAALDSNQSGVNENTVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMNRYDVKSILESSTLPIGGAAKRLKDMEQVVELNVDNVHRTEQDHSTTIINTSHLTDHHQTINNNNNNNNYGAWHGLSFQQQHHPYNTTTNNNMQLHNYTYGTQTQKLWCKQEQDSDDHHSYDHIHHQLQLGNSNNNSTHNFFQPNSGLQNMMNMDSGSMDNNSSASNSVVYGGDHGNNGYGGSYMIPMVNENEIKGFGYENVFGTSDPYHAHARNLYYQQQLTVDQGGSNSNNNNNWVPTAIPTITPRTTNVSLCPPFTLLHE 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01653 683 SUPERFAMILY DNA-binding domain 360 420 IPR016177 GO:0003677
Car03g01653 683 Pfam AP2 domain 361 411 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 Pfam AP2 domain 259 317 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 SUPERFAMILY DNA-binding domain 258 327 IPR016177 GO:0003677
Car03g01653 683 MobiDBLite consensus disorder prediction 171 246 - -
Car03g01653 683 MobiDBLite consensus disorder prediction 549 590 - -
Car03g01653 683 CDD AP2 258 327 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 SMART rav1_2 361 425 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 SMART rav1_2 259 331 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 ProSiteProfiles AP2/ERF domain profile. 259 325 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 PRINTS Ethylene responsive element binding protein signature 401 421 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 ProSiteProfiles AP2/ERF domain profile. 361 419 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 CDD AP2 360 419 IPR001471 GO:0003700|GO:0006355
Car03g01653 683 MobiDBLite consensus disorder prediction 1 22 - -
Car03g01653 683 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 612 - -
Car03g01653 683 Gene3D AP2/ERF domain 259 327 IPR036955 GO:0003700|GO:0006355
Car03g01653 683 Gene3D AP2/ERF domain 361 421 IPR036955 GO:0003700|GO:0006355
Car03g01653 683 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01653 Car-Chr3 62242257 62247145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01653 112 446 AP2-EREBP Transcription Factor Family AT5G17430 65.373 3.18e-140 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Car03g01653 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01653 K09285 - gmx:100797584 765.377