Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01622 atggctcttcgcgatgattttgagaggccttcTGCAATCCAGCAAAGAGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAGTCAGGAACTGGGAAGACAACAACATTTTGTTATGGAATTTTGCAGCTGCTCGATTACGGATTGGTTCAGTGTCAGGCTTTAGTTTTGGCCCCTACGAGGGAGCTAGCTCAACAAATTGATAAGGTTATGCGAGCTCTTGGCAATTTCTTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCACGAGGATCAACACATTATCCCTGTTGCTTGTTTGTTATGGTCAGTATTAAGGAGTTGA 345 0.3942 MALRDDFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTFCYGILQLLDYGLVQCQALVLAPTRELAQQIDKVMRALGNFFGVKVHACVGGTSVHEDQHIIPVACLLWSVLRS 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01622 114 PANTHER RNA HELICASE 6 102 - -
Car03g01622 114 Gene3D - 2 108 IPR027417 -
Car03g01622 114 Pfam DEAD/DEAH box helicase 12 98 IPR011545 GO:0003676|GO:0005524
Car03g01622 114 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 18 94 IPR014001 -
Car03g01622 114 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 6 102 - -
Car03g01622 114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 101 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01622 Car-Chr3 61950164 61950508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01622 7 102 Eukaryotic Initiation Factors Gene Family AT3G13920 84.375 3.95e-54 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01622 K03257 - cam:105851799 228.024