Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01621 ATGGAATTCGATTCCATTCCTCAAGATGCAATGTGGCAAATGAACTTGAGCTCAAGTCAAACAATGGAATCAGGACCTTATCCCGAGCATCCAGGAGAACCAGATTGTTCATATTATATCAGAACCGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCACCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAAAGGTTAGGGCAGCCAGAATGTCAGTATTATCTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGATAAGGCTGGGGTTGCTGGACGAGTTGCCTTGAATATTTTAGGCTATCCACTCCGCCCAAATGAATCTGAATGTGCTTATTATTTAAGAACTGGTCAATGCAAATTTGCGAACACTTGCAAATTTCATCATCCTCAACCAAGTAATATGGTACTTTCAATGAGGGGTTCTCCTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAACATTCATCCTACATTCCAAGTCCAAGGTGGCAAGGCCCTTCAAGTTATGCACCCTTAATTTTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAACAAACAATGGGAAACGATCAAACCTATGGAACTTCTCGCCAAGGTGAACCAGAAAATGCAGGGCTCCAAGGGGCATATCCCCAATTCCGTTCTGGCTCTGTTCCATTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTCGGTGCAGTCTGTCGTTTTCACCATCCACGTGAGAGGAAGATTCCTGCCCCTGATTGTGTTTTGAGTCCCATTGGCCTACCTTTGCGTCCTGGGGAACCTCTTTGTGTCTTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTATCCACGTCACCTTTAGCTGATGCCCCGGGACGGCGTCTGTTAGGTTCTTCATCAGGACCTGCTGCATTAAGTTTATCATCGGAAGGACTTGTTGAGTCGGGCTCAGCAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGATGAGGGATAA 1224 0.4518 MEFDSIPQDAMWQMNLSSSQTMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESECAYYLRTGQCKFANTCKFHHPQPSNMVLSMRGSPVYPTVQSPTTPGQHSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSTYNGQMGSDSPQQTMGNDQTYGTSRQGEPENAGLQGAYPQFRSGSVPLGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERKIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSTSPLADAPGRRLLGSSSGPAALSLSSEGLVESGSAKPRRLSLSETRQIPSGDDNIDDEG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01621 407 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Car03g01621 407 ProSiteProfiles Zinc finger C3H1-type profile. 31 58 IPR000571 GO:0046872
Car03g01621 407 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Car03g01621 407 PANTHER PROTEIN PHOSPHATASE RELATED 5 406 - -
Car03g01621 407 Gene3D - 259 342 - -
Car03g01621 407 SUPERFAMILY CCCH zinc finger 35 58 IPR036855 GO:0046872
Car03g01621 407 SUPERFAMILY CCCH zinc finger 79 104 IPR036855 GO:0046872
Car03g01621 407 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Car03g01621 407 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Car03g01621 407 SMART c3hfinal6 75 102 IPR000571 GO:0046872
Car03g01621 407 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Car03g01621 407 SMART c3hfinal6 121 148 IPR000571 GO:0046872
Car03g01621 407 Gene3D - 29 105 - -
Car03g01621 407 MobiDBLite consensus disorder prediction 373 407 - -
Car03g01621 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 102 IPR000571 GO:0046872
Car03g01621 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 57 IPR000571 GO:0046872
Car03g01621 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 340 IPR000571 GO:0046872
Car03g01621 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 294 IPR000571 GO:0046872
Car03g01621 407 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 148 IPR000571 GO:0046872
Car03g01621 407 SUPERFAMILY CCCH zinc finger 270 295 IPR036855 GO:0046872
Car03g01621 407 MobiDBLite consensus disorder prediction 207 235 - -
Car03g01621 407 SUPERFAMILY CCCH zinc finger 316 340 IPR036855 GO:0046872
Car03g01621 407 ProSiteProfiles Zinc finger C3H1-type profile. 75 103 IPR000571 GO:0046872
Car03g01621 407 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 5 406 - -
Car03g01621 407 MobiDBLite consensus disorder prediction 207 237 - -
Car03g01621 407 SUPERFAMILY CCCH zinc finger 122 149 IPR036855 GO:0046872
Car03g01621 407 ProSiteProfiles Zinc finger C3H1-type profile. 121 149 IPR000571 GO:0046872
Car03g01621 407 Gene3D - 106 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01621 Car-Chr3 61936060 61943240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01621 11 405 C2H2 Transcription Factor Family AT3G02830 62.376 8.12e-178 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car03g01621 zf-CCCH 4.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01621 - - gmx:100786261 770