Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01597 ATGTCCTCTCATACCACCACCACCACCGATTCATCTTCATTAGATATGAACACCTTTGAAGATTTAGACACATTCACAAGGTTGTTTCTCTTAATAATATTTCTCATCCTTTTCGTTCGAGTTTGTTACGCATATTTTTCGTCACGTCGTAATGATCACAATTCTAATTACATCACGACGTTTATACAACGTCGAGGTGATAATAAAGACGTCACAATAGGGCTCCCCATTAGTATTATAAATTCTTACGACACATTTTCTTTCACCAAAAACAACTTTGACACTGTTAATAATGATTATGACACGAGCTGTTCCATATGTATTTCGGATTATAAGGAATCGGAGATATTGAGGATGATGCCGCATTGTCGCCACTATTTTCATCGAAATTGTGTTGATACATGGTTGAAGGTTAATGGATCGTGCCCAATTTGTAGGAACTCACTGTTACAAGCTAATAATGATGAATCAAACTTAGAACGTGTTTAA 489 0.3599 MSSHTTTTTDSSSLDMNTFEDLDTFTRLFLLIIFLILFVRVCYAYFSSRRNDHNSNYITTFIQRRGDNKDVTIGLPISIINSYDTFSFTKNNFDTVNNDYDTSCSICISDYKESEILRMMPHCRHYFHRNCVDTWLKVNGSCPICRNSLLQANNDESNLERV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01597 162 SUPERFAMILY RING/U-box 97 152 - -
Car03g01597 162 CDD RING-H2_PA-TM-RING 104 146 - -
Car03g01597 162 SMART ring_2 104 145 IPR001841 -
Car03g01597 162 PANTHER RING-H2 FINGER PROTEIN ATL67 6 162 IPR044289 GO:0016567|GO:0016740
Car03g01597 162 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 6 162 - -
Car03g01597 162 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Car03g01597 162 Pfam Ring finger domain 103 146 IPR001841 -
Car03g01597 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01597 Car-Chr3 61724040 61724911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01597 71 154 C3H Transcription Factor Family AT2G46495 46.429 1.12e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01597 - - mtr:MTR_7g079290 181.8