Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01596 ATGTCCTCTCCTCATAGTTACTTCACCAACTTTGGGTTCGGCTATTCAATAGCCATAGCCCTCGCTTTTCTCGTTCTCTTCGCCACTCTCATCCTCTCTTTCTACTTCTGTTGCCGCACCAATAATAATCCCAACAACAATCATAATTCCATCCACGACACTCCCAATTACTCTCTCGGCGTCGTTGTTTCACGTGACATCTTCGTAACGGAAGACGATGAAGAAAACACGGTGGTGGGTCTAGACGAGAACGTAATAAACTCGTATCCGAGGTTTCAGTTCAACAGAAACAACGCAACTGTATTGGGACAGAACAGTACGTGTTCTATATGTTTGTGTGAGTACAAAGATTCGGAGATGCTGAGGATGATGCCTGAATGTCGTCATTACTTTCACCTATGTTGTCTCGATTCGTGGTTGAAGCTTAATGGTTCTTGTCCTGTTTGTCGGAATTCGCCTCTTCCTACGCCGCTTTCTACGCCACTTCAAGAGGTTGTTCCTCTTTCTCACTATTCAGCTGATCGGAGACGGAGGTGA 537 0.4544 MSSPHSYFTNFGFGYSIAIALAFLVLFATLILSFYFCCRTNNNPNNNHNSIHDTPNYSLGVVVSRDIFVTEDDEENTVVGLDENVINSYPRFQFNRNNATVLGQNSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSHYSADRRRR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01596 178 SMART ring_2 108 149 IPR001841 -
Car03g01596 178 Pfam Ring finger domain 107 150 IPR001841 -
Car03g01596 178 SUPERFAMILY RING/U-box 107 155 - -
Car03g01596 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Car03g01596 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Car03g01596 178 PANTHER RING-H2 FINGER PROTEIN ATL67 3 178 IPR044289 GO:0016567|GO:0016740
Car03g01596 178 CDD RING-H2_PA-TM-RING 107 150 - -
Car03g01596 178 PANTHER RING-H2 FINGER PROTEIN ATL67 3 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01596 Car-Chr3 61719542 61720338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01596 1 169 C3H Transcription Factor Family AT5G07040 37.427 4.74e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01596 - - lja:Lj1g3v2807930.1 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01596 03 61719542 61720338 Car07g02795 07 53575852 53577205 PCT