Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01577 ATGATGTCGATGGAAGGGAGGGAGGAAAATGCAGAAAGCGAACCGAACGAGTCGGACGAGTCAACTCACCCCGAGGAGAAAGAAAAAGAAGAAGAACTCGACGCGGTTGTTGTGGTGGATGAGATCCAACGAGTCATGGAATCGGTTGTTCAATTCGGAGAGTACAGAAGGACACGGAGGAAGGAATCACATAACCTCGCTCGTCGTTTCAAACACATGTTGCCTCTTATGGAAGAACTTCGTGACCTTCAACAACCTGTTCCTCAAGACGGCGTCGTTTGGTTGATCAAACTTAGGGATTCGCTTTCCTTCGCTAAGGACTTGTTGAAATTGTGTAGCCAAGGAAGCAAGATTCACCTTGCATTGGAGGGCGAGGCGGTTATGATAAAATTTCAGAAGGTTTATAAAAAATTAAGCCAAGCTTTTGATTGTGTGCCTTGCGATGCCTTAGGGATCTCTGATGAAGTAAAGGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGGACAGATACACAAGACATAGAGCTAGCAATGGATATGATGGTGGTGTTCTCTGATGAAGATGATCGTAATGTTGATAGTGCTATTGTTGAAAGGCTTGCAAAAAAGTTGGAGCTTCACAGTGTTGAGGATCTTGAGGTAGAAACAGTAGCTGTTGGGAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAGAATAATTGATCTTCTTAACAAATTCAAAAGGATTGCAGGTATGGAAGAAAGCAACTGTGTCCTTGATGATGATGATCCTGCAGGGCCTAAGATGCTTGGAAGGAGCACTTCTTTGGTTATCCCTCATGAGTTTCTATGCCCAATAACACTTGAAATCATGAGAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCACAAAATCTGCCCAAAGACTAGACAACCTCTAGAACATCTTCAATTAGCACAAAATTGTGCCTTAAAAAACTTAATTAGTGAATGGTGTGAGAACAACAACTTCAGACTTCCAAAAACCTACACTTCATGTCAAGAAACCTGTTCCATTGACAACAAAGAAGAAATCCCATCTTTAGTTGAAAGCCTATGGTCTATCAATTTAGAAGAGCAGAGAAAGGCGGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGACAACAGGATTCTAATTGCTGAGCATGGAGGAATACAACCTTTAGTTCAAATCCTATCCTATCCTGATTCAAAAATACAAGAACATGCTGTGACAGCACTTTTGAATTTATCAATTGATGAAGGTAACAAAAAACTTATATCAAAAGAAGGTGCTATTCCAGCTATTATAGAAGTGTTGGAGAATGGAAGTATTGTAGCTAAAGAAAACTCAGCAGCAGCTTTATTTAGCTTATCAATGATAGATGAGAACAAAGAGATTGTAGGAATGTCAAATGGGATTCCACCTTTGGTTGATTTATTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCAACAGCACTTTTTAGTTTATCATTAAACAATGCAAATAAAGATAGGGCTATAAGAGCTGGAATTGTGACACCTTTACTTGAATTATTAAAAGACATGAACTTGGGAATGATTGATGAAGCACTTTCTATTTTGTTACTACTTGTGTTGAATCCAGAAGGAAGACAAGAGATTGGAAATCTATCATTTATTGAAACTCTTGTTGACTTTATTAGAGAAGGGGCACCTAAGAACAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTTAAGCAATTCATCTTTTACATTGGCAGCACTTCAGTTTGGAGTTTATGAACATTTAATTGAGATTAAACAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTATTTTAGAGCTCATAAGCAAGAGTGAGCAAATTTAA 1962 0.3899 MMSMEGREENAESEPNESDESTHPEEKEKEEELDAVVVVDEIQRVMESVVQFGEYRRTRRKESHNLARRFKHMLPLMEELRDLQQPVPQDGVVWLIKLRDSLSFAKDLLKLCSQGSKIHLALEGEAVMIKFQKVYKKLSQAFDCVPCDALGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDEDDRNVDSAIVERLAKKLELHSVEDLEVETVAVGNLVRERKGQQAESTQRIIDLLNKFKRIAGMEESNCVLDDDDPAGPKMLGRSTSLVIPHEFLCPITLEIMRDPVIIASGQTYERESIEKWFKSNHKICPKTRQPLEHLQLAQNCALKNLISEWCENNNFRLPKTYTSCQETCSIDNKEEIPSLVESLWSINLEEQRKAVERIRMLSKENPDNRILIAEHGGIQPLVQILSYPDSKIQEHAVTALLNLSIDEGNKKLISKEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEIVGMSNGIPPLVDLLQNGTVRGKKDAATALFSLSLNNANKDRAIRAGIVTPLLELLKDMNLGMIDEALSILLLLVLNPEGRQEIGNLSFIETLVDFIREGAPKNKECAASVLLELCLSNSSFTLAALQFGVYEHLIEIKQSGTNRAQRKANAILELISKSEQI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01577 653 SUPERFAMILY RING/U-box 280 356 - -
Car03g01577 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515
Car03g01577 653 Gene3D - 358 652 IPR011989 -
Car03g01577 653 MobiDBLite consensus disorder prediction 1 33 - -
Car03g01577 653 SUPERFAMILY ARM repeat 372 648 IPR016024 -
Car03g01577 653 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Car03g01577 653 PANTHER U BOX DOMAIN-CONTAINING 28 651 - -
Car03g01577 653 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Car03g01577 653 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Car03g01577 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 355 IPR013083 -
Car03g01577 653 Pfam Armadillo/beta-catenin-like repeat 486 524 IPR000225 GO:0005515
Car03g01577 653 Pfam Armadillo/beta-catenin-like repeat 403 442 IPR000225 GO:0005515
Car03g01577 653 Gene3D - 33 146 IPR036537 GO:0007166
Car03g01577 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 538 IPR000225 GO:0005515
Car03g01577 653 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 28 651 - -
Car03g01577 653 SMART arm_5 403 443 IPR000225 GO:0005515
Car03g01577 653 SMART arm_5 567 607 IPR000225 GO:0005515
Car03g01577 653 SMART arm_5 444 484 IPR000225 GO:0005515
Car03g01577 653 SMART arm_5 526 566 IPR000225 GO:0005515
Car03g01577 653 SMART arm_5 485 525 IPR000225 GO:0005515
Car03g01577 653 Coils Coil 153 173 - -
Car03g01577 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Car03g01577 653 CDD RING-Ubox_PUB 285 327 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01577 Car-Chr3 61479033 61482717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01577 1 653 U-box Gene Family AT5G42340 58.533 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01577 - - cam:101489704 1253.43