Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01573 ATGAAATCATTCACTCTAGGTgaaacctcttcttcttcctctccttacaattcaagttcaactacaaggttatgcagctaccatgtgtttttgagttttagaggagaagacacaagaaaaggtttcactgaccatttatgtgcttcccttgaaagaaaaggtatcacaactttcagagacgacaaagaccttgtaagaggacaagtcatttcaaagaagctaatcaatgcaattcaagattctatgtttgcaatcactattctctcacaagattatgcttcttcaacttggtgtttggatgagcttcaaatgatcatggagtgcagcaataacaacctgcagggtctagaggtttttcctgtcttctatggtgtggatccatctgatgttaggcatcaaagaggaagctatgaggatgctttcaggaaacatcaggagagatttggtcaacacagtgacaaagttgaaaggtggagagatgcattgacacaagttgctagttactctggatgggattCCAAGGATCAACATGAGGCATTACTAGTGGAAAGCATTGCTCAACACATACATAGAAAGTTGGTTCCTAAATTGCCATCTTGTACAGAGAATCTTGTTGGGATTTCTTCAAAGGTAGAGAAAGTGAGAAATCTCATAGGTATGCggttaaacggggttcgctttatcggcatatggggtatgggtggcataggcaagacaactattgctagagctgtctatgaagcaatccaaggtgaatttcaactcacttgctttcttgcaaatgttaaagagacatctgagacaaatggtttggttcaaatacaaagacaacttctttctcatgttggtataagtaggaatgattttcataatttgtatgatgggaaaaggacaatacaaaactcattatgcagaaaaaaggttctccttgttcttgatgatgtgaatgaagtaaaccagttagagaatttggctgagaaacaagattggtttggtccaggaagtagaataataatcacaactagagataaacacttgttagtagcacatggagtacataaaatctatgaggttggaatattattccaaaatgaagcccttcatctcttttgtttgaatgcttttaaaagagatcaaccacaagaagggtattttgatttatccaaagaagtggtggaatatactagtggtcttccattggcacttgaggttttaggttcacatctctatggaagaaatgttgatgtttggcatagtgctatcaaaaaattaaaaaaaattccacacccaagaattcaagataaactgaaaataagttatgagagtttagataccatggagaaggatatttttctagatattgctttttacttcaagggaatgaagagggacgaagtaatggatatattagaaagttgtggttattgccctcaaattggaattgaaattttgattgaaagatctttgataactctagattctgtgaataataaacttggaatgcatgatttgcttcaagaaatgggcagggatattgtatttcaggaatctccaaatgatcctagtagacgtagcaggttgtggtctaaagaggacattgatcatgtcttgacaagaaacaagggaactgaagcaattaacagcataggtatgaaattacttcaaccatatgaagcacattggagcactgaagcattctttaagacaagtcagttaaaatttctaagtttaaatgagatgcaccttccccttggcctcagttgccttccttgttcattaaaagttcttcactggagaggatgtcctttgaaaactctgccactaacaactcaacttgatgaagtagttgacattaaattatctcatagcaaaattcaacaactttggctaggaataaagtttatagaaaagctcaagtacttgaatttggctttttccaagaacctaaagagattgcctgatttttctggtgttccaaatcttgaaaaattgattcttaaaggctgtgaaagcctaactgaggttcatccatcccttgtacatcataagaaagttgttttgatgaatttagaagactgcaaaagtcttaaatctcttccagggaagttGGAGATGAGTTCCTTGAAGAAGCTAAATCTTTCTGGCTGCTATGAATTTAAATTCCTTCCAGAGTTTGGAGAAAGCATGGAGAATCTATCATTGCTTGCTTTACAAGGAACAGCTATAACAAAACTACCCTCATCACTCGGATGCTTAGTTGGACTTACTGATTTCAACTTAAAGGACTGCAAAAGTCTTCTTTGTCTTCCAGATACCATTCATGGACTGAATTCCCTTATAATTCTAAATATTTCCGGGTGCTCGAAACTCTGTAGATTGCCGGACGGTTTAAAGGAAATCAAGTGTTTGAAGGAACTCCATGCCAATGATACTGCTATTGATGAACTACCTTCCTCCCTTTTTTATCTAGATAGTCTTGAAGTATTATCATTTGCTGGTTCCAAAGGGCCATTGAACAAGTCAATGAACTGGTTTGTTCCCTTCAATTGGATGTTTGGTGGTCAACCAGCTCCCACTGGATTCAGATTTCCAACTTCTGTCTGGAATCTACCTTCTTTGAGATGTATAAATCTAAGTTACTGTAATCTTTCTGAAGAATCAATTCCGGAATATTTTCGCCATTTATCGTCGTTGACGTCTTTGGATCTAACTGGTAACAATTTTGTTATCATACCAAGCAGCATTTCTAAACTTCCAAGGCTGAAATTTCTTACTCTAAATAAGTGCCAAAAGCTTGAATTGTTGCCAGAGATTCCGTCAAGTATGATACAGTTGAATGCAAGCAATTGTGATTCAATGGAAACTACCAAATTTAATCCAGCAGAGCTATGTAGTCTCCTTGCATCACCTATACAACGGTTTATTGCTGACGAATTTTTAAAGAGCTTTATGAAGGGACTCTGTCTTCCCTCTGCAAGATTTGACATGCTTATCCCTGGGGAAGAAATTCCATCTTGGTTTGTTCCTCAAAGAACAGTTTCATGGGCAAAAATACAAGTCCCTAATAATTTACCTCTAGATGAATGGATAGGATTTTCTCTATGTTTCCTATTAGTGAGTTATGTTGTCCCACCTGAACTGTGCAACCATGAGATTGAGTGTTATTTGTTTGCACATAATGGCAAGCAGTTGGTCAGCACAAGGACATTACCTCCTATGGATCCATGGTATCCTCACCTTTATATTCTCTACTTGTCTATTAATCAATTTCACGACAAAATTCTCAAAGACAATTACTGGACTGACATTGAATTTGTATTGAAATGTTATTGCTGTCAGTCATTGCAAATAGTGAGGTGTGGTTGCCGTTTGGTATGTAAGCAAGATATTGTAGATTGGAACAAAGTTATGAGTCAATTCAATGAGAGTTGA 3432 0.1643 MKSFTLGETSSSSSPYNSSSTTRLCSYHVFLSFRGEDTRKGFTDHLCASLERKGITTFRDDKDLVRGQVISKKLINAIQDSMFAITILSQDYASSTWCLDELQMIMECSNNNLQGLEVFPVFYGVDPSDVRHQRGSYEDAFRKHQERFGQHSDKVERWRDALTQVASYSGWDSKDQHEALLVESIAQHIHRKLVPKLPSCTENLVGISSKVEKVRNLIGMRLNGVRFIGIWGMGGIGKTTIARAVYEAIQGEFQLTCFLANVKETSETNGLVQIQRQLLSHVGISRNDFHNLYDGKRTIQNSLCRKKVLLVLDDVNEVNQLENLAEKQDWFGPGSRIIITTRDKHLLVAHGVHKIYEVGILFQNEALHLFCLNAFKRDQPQEGYFDLSKEVVEYTSGLPLALEVLGSHLYGRNVDVWHSAIKKLKKIPHPRIQDKLKISYESLDTMEKDIFLDIAFYFKGMKRDEVMDILESCGYCPQIGIEILIERSLITLDSVNNKLGMHDLLQEMGRDIVFQESPNDPSRRSRLWSKEDIDHVLTRNKGTEAINSIGMKLLQPYEAHWSTEAFFKTSQLKFLSLNEMHLPLGLSCLPCSLKVLHWRGCPLKTLPLTTQLDEVVDIKLSHSKIQQLWLGIKFIEKLKYLNLAFSKNLKRLPDFSGVPNLEKLILKGCESLTEVHPSLVHHKKVVLMNLEDCKSLKSLPGKLEMSSLKKLNLSGCYEFKFLPEFGESMENLSLLALQGTAITKLPSSLGCLVGLTDFNLKDCKSLLCLPDTIHGLNSLIILNISGCSKLCRLPDGLKEIKCLKELHANDTAIDELPSSLFYLDSLEVLSFAGSKGPLNKSMNWFVPFNWMFGGQPAPTGFRFPTSVWNLPSLRCINLSYCNLSEESIPEYFRHLSSLTSLDLTGNNFVIIPSSISKLPRLKFLTLNKCQKLELLPEIPSSMIQLNASNCDSMETTKFNPAELCSLLASPIQRFIADEFLKSFMKGLCLPSARFDMLIPGEEIPSWFVPQRTVSWAKIQVPNNLPLDEWIGFSLCFLLVSYVVPPELCNHEIECYLFAHNGKQLVSTRTLPPMDPWYPHLYILYLSINQFHDKILKDNYWTDIEFVLKCYCCQSLQIVRCGCRLVCKQDIVDWNKVMSQFNES 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01573 1143 SUPERFAMILY "Winged helix" DNA-binding domain 431 537 IPR036390 -
Car03g01573 1143 Pfam TIR domain 27 206 IPR000157 GO:0007165
Car03g01573 1143 SMART LRR_typ_2 870 894 IPR003591 -
Car03g01573 1143 SMART LRR_typ_2 729 752 IPR003591 -
Car03g01573 1143 SMART LRR_typ_2 800 823 IPR003591 -
Car03g01573 1143 SMART LRR_typ_2 895 918 IPR003591 -
Car03g01573 1143 PANTHER TMV RESISTANCE PROTEIN N-LIKE 33 761 - -
Car03g01573 1143 PANTHER TMV RESISTANCE PROTEIN N-LIKE 722 957 - -
Car03g01573 1143 Gene3D - 19 191 IPR035897 -
Car03g01573 1143 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 761 IPR044974 GO:0006952
Car03g01573 1143 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 722 957 IPR044974 GO:0006952
Car03g01573 1143 SUPERFAMILY L domain-like 551 832 - -
Car03g01573 1143 Gene3D - 192 355 IPR027417 -
Car03g01573 1143 Pfam NB-ARC domain 211 443 IPR002182 GO:0043531
Car03g01573 1143 Pfam C-JID domain 998 1130 IPR045344 -
Car03g01573 1143 ProSiteProfiles TIR domain profile. 25 193 IPR000157 GO:0007165
Car03g01573 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 454 IPR027417 -
Car03g01573 1143 SUPERFAMILY L domain-like 769 1092 - -
Car03g01573 1143 Pfam Leucine rich repeat 871 929 IPR001611 GO:0005515
Car03g01573 1143 MobiDBLite consensus disorder prediction 1 21 - -
Car03g01573 1143 Gene3D - 361 444 IPR042197 -
Car03g01573 1143 SMART till_3 26 168 IPR000157 GO:0007165
Car03g01573 1143 Gene3D Ribonuclease Inhibitor 704 843 IPR032675 -
Car03g01573 1143 Gene3D Ribonuclease Inhibitor 857 978 IPR032675 -
Car03g01573 1143 Gene3D Ribonuclease Inhibitor 559 703 IPR032675 -
Car03g01573 1143 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 171 IPR035897 -
Car03g01573 1143 PRINTS Disease resistance protein signature 227 242 - -
Car03g01573 1143 PRINTS Disease resistance protein signature 302 316 - -
Car03g01573 1143 PRINTS Disease resistance protein signature 395 409 - -
Car03g01573 1143 PRINTS Disease resistance protein signature 703 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01573 Car-Chr3 61430550 61436261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01573 7 835 WRKY Transcription Factor Family AT4G12020 31.722 1.61e-107 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01573 - - gmx:100815486 1486.09