Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01569 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACATCATTTGCAAGGAACACCAGTTTATTATTATTGTCCACCAACTTTTGAAGAGCGCGAGTCTTTAACCTCTAATGGTGGCACCACTGCATCGCTCGCTGCTGGATTTCTCGTTGGAATGAACCTTGAAGCATCCATACCGGATACGTTCCGGTCTCCTCCTGCGCCTTTGCCTTATGACATTGTCTTAGGAGGTTCTGCGTCAACAGATTCCGAGTCTGGCCGAGAAACAGTTAGTGTTAGTAGTTTTGAAACTTCAATTACACGCGATGATATTGAAGAATCAAATTGTAAAGCTCAAGCCAAATCTACACCTTTATCTCCAAAGAAGGGAGAACTATTAAAATCAAATGGAACTCAAGTATTTGTGACAGAAGAAGAGGATGTTTGTCCAATTTGTCTTGAAGAATATGATGATGAGAATCCTAAAAATCTGACAAAATGTGAACACCATTTTCACTTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 561 0.4046 MGGCCCSARKHHLQGTPVYYYCPPTFEERESLTSNGGTTASLAAGFLVGMNLEASIPDTFRSPPAPLPYDIVLGGSASTDSESGRETVSVSSFETSITRDDIEESNCKAQAKSTPLSPKKGELLKSNGTQVFVTEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01569 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 186 - -
Car03g01569 186 Pfam Ring finger domain 139 180 IPR001841 -
Car03g01569 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 185 IPR013083 -
Car03g01569 186 SMART ring_2 140 180 IPR001841 -
Car03g01569 186 SUPERFAMILY RING/U-box 134 184 - -
Car03g01569 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Car03g01569 186 MobiDBLite consensus disorder prediction 76 95 - -
Car03g01569 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01569 Car-Chr3 61369266 61371546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01569 1 186 C3H Transcription Factor Family AT4G00335 57.527 7.28e-74 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01569 - - gmx:100812687 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01569 03 61369266 61371546 Car07g02766 07 53128805 53133726 PCT