Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01554 ATGGCTGTGGTGAATCATGTTGGGGGAGAAATTGAAGAGGAACCTGATCAAGGTGTGGTTGATGAAGCAATTTATGTTGCTGTGTCAAAGGATGTAAAAGAGAGTAAATCGAATCTGATATGGGCAATACAGAATTCTGGAGGAAAGAAGATCTGCATCCTCTATGTTCATGTGCCTGCAACAATGATCCCTTTGATGGGCGCTAAATTTCCCGCAAGTTCGTTCAAAGACCAAGAAGTCCGAGCTTACCGTGACATCGAAAGGCAAAACATGCATAAGACTCTTGATGAATATCTTCGAATATGTCATCGGATGGGGGTGCGAGCGGAGAAATTGCATATTGAAACGGACAACATTGAGAAAGGAATTTTAGAACTTATCTCTCAGCAAGGTATCCGAAAGCTTATTATGGGAGCAGCTTCTGATAAGTGCTATTCTAGgagaatgatggatctcaaatcgaagaaagcgatctatgtatgcgaacaagctccagcttcttgctatatacagTTTATCTGCAAAGGCCACCTTATACACACAAGGGATCGCAGTTTAGATGAAAGAAACGTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCTAACTCTGTGAGATCTTTGAGATCTCAATCTATTACGCTTGGGCAAAATCATAGGACAGATTCAATTAATTCTGTTCAAGAGTTATTTCGAAGAGCGAAGTCTGCCAGCGATGAACAGAGACCGAGCAACGTGGATGTTCCTTCTCCAGATGACACTGCAAGGTTTTCAACTCCACGTAACATGCGAGGTACCGAAGTAAGTTCTGATGAGTCTGATAGGCTGTCAAAGACGAGTCCTTCAGGTTTGTCGACATGCTCAGATAGTGCAATTGAACCAGCATTGACCCCGAATTCGGTTGCCGAGAGCAGTGAGATTGCATTGGAGTTGAGTTTGAGTCACCTTGTTATAGAGGATCTTCATCATTTATCTCCTCCCAGTGTACTGCAGGACGGTGGAGTGAACGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAAGCTCATAATGCTACTCGAAATGCATATCAAGAAACTTTTAGGCGAGGGAAAGCTGAAAAGGAAGCCATTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACTTGAGGAAAATGGCAGAGGAAGAACTAAAAAAGGAAAAAGAAGAACTCGAGAATATAACAAGCCAGAGAGACAAAGTTCAGGAAGAACTGCAACTAGCCCTGGATCTGAAGTCATCACTAGAGAGTCAACTTGCATCGTCTGAAGTTATGGTACAGGAGCTGGAGCAGAAGATTATATCTGCTGTGGAATTGTTACAAAGCTACAAGAATGAACGAGAGGAATTGCAGATGCAGCGCGATAATGCATTGAGAGAGGCTGAAGAGCTGAGGAAAAAACAAGGAGACGACTCGAGCTCCCATGTACCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTGAAGAAGCAACACGTAACTTTGATCCATCTCTAAAGATCGGAGAAGGCGGATATGGAAATATATATCAAGGTATCCTCCGTCACACCGAAGTGGCTATAAAAATTTTGCACGCCAATAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTGGATGTATTGAGTAAGCTAAGGCATCCAAATCTGATCACTCTTATAGGAGCCTGTCCAGAATCCTGGAGTCTTGTCTACGAGTATTTACCAAACGGGAGCCTTGAAGACCGTCTTGTCTGCAAGGACAACACTCCTCCATTATCATGGCAAACGCGGATCCGCGTCGCTGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCAAGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCTTCCAATATCATCTTGGATGCAAACCTTGTCAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCGAATTACGAGAATTCTAGTAACAATAGTACGCAGTTTTGGAAAACCGATCCAAAGGGGACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCTGGAGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATTATATTATTGAGATTGTTGACTGGGAGACCGGCTTTGGGAATAACTAAGGAAGTGAAATATGCTATAGATACCGGAAAGTTGACATCTTTATTAGACCCTTTGGCCGGAGACTGGCCATTTGTGCAGGCCGAGCAGTTAGCACGCTTGGCTTTGAGGTGTTGTGAGATGAATAGGAAGAGCCGGCCGGATCTTCATTCGGATGTGTGGAGGATACTGGATTCAATGAGGGCTTCTTCTGGAGGTACAAACTCCTTTGGTCTAAGTTCTGAAGGGCCTCACCAACCTCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTACGAAGCGGAGGCTATCCGAGGATGGCTTGACAGCGGCCACGACACTTCACCAATGACAAATAGTACACTTGCACATCAGAGTCTCGTCCCCAACCGCGCTCTTCGCTCCGCGATCCAGGATTGGCTTCAAAGTCACTAA 2607 0.4285 MAVVNHVGGEIEEEPDQGVVDEAIYVAVSKDVKESKSNLIWAIQNSGGKKICILYVHVPATMIPLMGAKFPASSFKDQEVRAYRDIERQNMHKTLDEYLRICHRMGVRAEKLHIETDNIEKGILELISQQGIRKLIMGAASDKCYSRRMMDLKSKKAIYVCEQAPASCYIQFICKGHLIHTRDRSLDERNVEVASPLVQQVPNSVRSLRSQSITLGQNHRTDSINSVQELFRRAKSASDEQRPSNVDVPSPDDTARFSTPRNMRGTEVSSDESDRLSKTSPSGLSTCSDSAIEPALTPNSVAESSEIALELSLSHLVIEDLHHLSPPSVLQDGGVNDTLYDQLEQAMSEAHNATRNAYQETFRRGKAEKEAIEAIRKAKASESLYTEELNLRKMAEEELKKEKEELENITSQRDKVQEELQLALDLKSSLESQLASSEVMVQELEQKIISAVELLQSYKNEREELQMQRDNALREAEELRKKQGDDSSSHVPQLFSEFSFSEIEEATRNFDPSLKIGEGGYGNIYQGILRHTEVAIKILHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLVCKDNTPPLSWQTRIRVAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSNNSTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAIDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLHSDVWRILDSMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLAHQSLVPNRALRSAIQDWLQSH 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01554 868 SMART Ubox_2 801 864 IPR003613 GO:0004842|GO:0016567
Car03g01554 868 Gene3D HUPs 18 143 IPR014729 -
Car03g01554 868 ProSiteProfiles U-box domain profile. 797 868 IPR003613 GO:0004842|GO:0016567
Car03g01554 868 Coils Coil 336 360 - -
Car03g01554 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 796 868 IPR013083 -
Car03g01554 868 SMART serkin_6 510 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01554 868 MobiDBLite consensus disorder prediction 233 291 - -
Car03g01554 868 Pfam U-box domain 799 868 IPR003613 GO:0004842|GO:0016567
Car03g01554 868 Gene3D Transferase(Phosphotransferase) domain 1 583 787 - -
Car03g01554 868 ProSitePatterns Protein kinases ATP-binding region signature. 516 537 IPR017441 GO:0005524
Car03g01554 868 CDD STK_N 24 176 - -
Car03g01554 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Car03g01554 868 Coils Coil 385 482 - -
Car03g01554 868 SUPERFAMILY Protein kinase-like (PK-like) 485 768 IPR011009 -
Car03g01554 868 PANTHER OS02G0152300 PROTEIN 17 867 - -
Car03g01554 868 SUPERFAMILY RING/U-box 792 867 - -
Car03g01554 868 MobiDBLite consensus disorder prediction 241 266 - -
Car03g01554 868 Pfam Protein kinase domain 515 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01554 868 ProSiteProfiles Protein kinase domain profile. 510 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01554 868 PANTHER U-BOX KINASE FAMILY PROTEIN 17 867 - -
Car03g01554 868 Gene3D Phosphorylase Kinase; domain 1 479 582 - -
Car03g01554 868 CDD RING-Ubox_WDSUB1_like 802 843 - -
Car03g01554 868 MobiDBLite consensus disorder prediction 275 291 - -
Car03g01554 868 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 39 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01554 Car-Chr3 61161908 61167175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01554 11 868 U-box Gene Family AT2G45910 55.620 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Car03g01554 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01554 - - gmx:100807515 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01554 03 61161908 61167175 Car07g02756 07 52861516 52866372 PCT