Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01540 ATGTATAGCTTGGTCAATATTGGTGATCAAAATTTCTTGTCAAAGAAGGCATTTGAAGTTAAATGCATGGATCACGTGGACCATATGGCGCTATCTGGTTCGGCATCTTACTATATGCAGCAGCAGAGAGAACTAGCTGTTTCTGGACCACTACCTGAGTTACATGTTTCGCCGAGTATTCGCCCATTGTCTAATCCCAATAATCTACCATTTCAATCCAACATTGGTGGTGGTCACATCGGATCCTCATTGCCCTTAGAATCGTTGGCAATTTCATCTCACGCTGTCAATGTGGATGGTCCTACTGGGGTGTCAACCGGAGAGACTGTGAAAAGGAAGAGAGGAAGGCCTCGGAAATATGGCTCTGATAGAGTTGTGTCATTGGCGCTGAGTCCAAGTACAACACCATCTAGTAATCCTATAACTGTGACACAAGACGGCCAGAAACGCGGGAGAGGGCGTCCACCTGGGAGTGGGAAGAAGCAGCAATTGGCTTCTTCAGGTGAGTCGATACCTGATTCAGCTGGGATTGGATTTGCCCCTCATGTCATCCAGATTCCAAGTGGAGAGGACATTGCAGCAAAAATATTGGCGTTTTCTCAGATGCAGGCTAAAGCTTTATGTGTTATGGCAGCTGAAGGTCATGTCTCAATTGCCACACTTCGGCAGCCTTCAACTTCAGGCGGCACTGTCAAATTTGAGGGAAATTTGGAGTTACTGTCCATGTCAGGCTCTTACTTGCCAACTGATAGTGGCAGCTTACGGAATCGAACTGGTGGACTAAGTGTTACCCTTGTTAGTCCTGATGGCCGAGTCGTTGGTGGAGGAATTGGCGGTGTGCTCATTGCATCAGATCTTGTCAAGGTGACAGTTGGGACCTTTCAGTGGGGTAGATTAAAGGGAAAGTACAAGAAAAAGGGAAGCTCACAAGATGCATCAGTAGTTGCTGTGGAATCAGATCACCAAGGAATTCATAATCCAGTTGCACTGAATAGCATTTTACCAAATCAACAAAATCTTACTAGTCCAACCTCATCCTTAAGTCCTTGGTCTGCATCGCGTCCGATGGATATGCGAAATTCCCATGTTGACATTGATTTAATGCGTGGATGA 1113 0.4591 MYSLVNIGDQNFLSKKAFEVKCMDHVDHMALSGSASYYMQQQRELAVSGPLPELHVSPSIRPLSNPNNLPFQSNIGGGHIGSSLPLESLAISSHAVNVDGPTGVSTGETVKRKRGRPRKYGSDRVVSLALSPSTTPSSNPITVTQDGQKRGRGRPPGSGKKQQLASSGESIPDSAGIGFAPHVIQIPSGEDIAAKILAFSQMQAKALCVMAAEGHVSIATLRQPSTSGGTVKFEGNLELLSMSGSYLPTDSGSLRNRTGGLSVTLVSPDGRVVGGGIGGVLIASDLVKVTVGTFQWGRLKGKYKKKGSSQDASVVAVESDHQGIHNPVALNSILPNQQNLTSPTSSLSPWSASRPMDMRNSHVDIDLMRG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01540 370 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 300 - -
Car03g01540 370 MobiDBLite consensus disorder prediction 127 146 - -
Car03g01540 370 MobiDBLite consensus disorder prediction 336 355 - -
Car03g01540 370 MobiDBLite consensus disorder prediction 96 172 - -
Car03g01540 370 CDD DUF296 181 269 IPR005175 -
Car03g01540 370 Gene3D - 181 320 - -
Car03g01540 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 56 338 - -
Car03g01540 370 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Car03g01540 370 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Car03g01540 370 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 295 IPR005175 -
Car03g01540 370 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 56 338 IPR039605 GO:0003680
Car03g01540 370 ProSiteProfiles PPC domain profile profile. 175 318 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01540 Car-Chr3 60934944 60941184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01540 23 370 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.049 7.25e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01540 - - cam:101500720 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01540 03 60934944 60941184 Car03g01540 03 60934944 60941184 ECH
Car03g01540 03 60934944 60941184 Car07g02738 07 52587510 52594173 PCT