LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g01533	ATGAACAATAGAGCGAGATACCCACCTGGGATTGGGTTAgggcgaggtggtggtggtggtttgaactcgaaccctgggtttcaacagagaccacaacaacaacagtatgtgcagagacacatgatgcagaatcagcatccgcaacactaccagcagaatcaacagtatcagcagcaacagcagcaacaacagcagcagcagtggttgagaaggaaccagttgggtggtactgacaccaacGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCAGCCGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCACCTGATACTCGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGCTTTGAAAGGCCATCCCCTATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTGGTTCCAACACGAGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGCAGATTCAAGTTATGGTCACAACTGGTGGTACCAGTCTAAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCCATGCTTGTCATGGATGAGGCTGATAAACTCCTCTCCCCAGAGTTCCAGCCTTCAATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTGATGTTTTCAGCTACGTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATTCATGCGAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCATGACTTTCGCAATGGTGCCTGCAGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATTGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATAACCTATGAGGATCGTTTCAATTTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCTCCATTCATTGACCAGGCTATCTATTGTCGGTGA	1500	0.354	MNNRARYPPGIGLGRGGGGGLNSNPGFQQRPQQQQYVQRHMMQNQHPQHYQQNQQYQQQQQQQQQQQWLRRNQLGGTDTNVVEEVEKTVQSEAADPSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g01533	499	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	272	280	IPR000629	-
	Car03g01533	499	Pfam	Helicase conserved C-terminal domain	351	457	IPR001650	-
	Car03g01533	499	Gene3D	-	83	329	IPR027417	-
	Car03g01533	499	CDD	SF2_C_DEAD	337	466	-	-
	Car03g01533	499	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	156	326	IPR014001	-
	Car03g01533	499	Gene3D	-	330	498	IPR027417	-
	Car03g01533	499	CDD	DEADc_DDX6	127	327	-	-
	Car03g01533	499	SMART	ultradead3	144	340	IPR014001	-
	Car03g01533	499	MobiDBLite	consensus disorder prediction	87	116	-	-
	Car03g01533	499	MobiDBLite	consensus disorder prediction	1	58	-	-
	Car03g01533	499	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	32	499	-	-
	Car03g01533	499	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	125	153	IPR014014	GO:0003724
	Car03g01533	499	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	336	496	IPR001650	-
	Car03g01533	499	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 6	32	499	-	-
	Car03g01533	499	MobiDBLite	consensus disorder prediction	22	58	-	-
	Car03g01533	499	Pfam	DEAD/DEAH box helicase	150	314	IPR011545	GO:0003676\|GO:0005524
	Car03g01533	499	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	479	IPR027417	-
	Car03g01533	499	SMART	helicmild6	376	457	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g01533	Car-Chr3	60882184	60888467	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g01533	125	489	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.420	9.61e-94	289

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g01533	K12614		-	tcc:18614173	865.914