Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01530 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAATTGCTTCAAATGCAGTCACTGCAAGGGATATCTTACGATGAGCACCTGCTGCTCAATGGACGGTGTCCTCTATTGTAAGCCACATTTTGAGCAACTTTTTAAGGAATCTGGAAATTTCAGCAAGAACTTTCAAACAGCAAAATCCTCTGATAGACAAAATGAGCTTGTGAACAAAACTCCTAGCAGACTCTCCTCTATGTTTAGTGGAACTCTAGACAAATGCTCAGTTTGCTCAAAAACAGTCTATCCTTTGGAGAAGATGTCACTAGAAGGGGAATGCTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTTACACATTCTTCCTATGCTGCCCTAGATGGTGTCCTCTATTGTAAGCACCATTTTCAACAACTTTTCATGGAGAAGGGAAATTACAATCATGTACTTCAAGCTGCTGCAAACAGAAAGAATGCAACTCCACCTCCTGAACCAGCTGAACTTATTGATGAACCCCCAAAGCCAGAAGAAACTAAAGAAGAAACTAAAGAAGAAACTAAAGAAGAAACAGAAGAAGAAACTAAAGAAGAAACAGAAGAAAAAACTGAAACAGAGGAAACTTGA 693 0.3925 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTCCSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDRQNELVNKTPSRLSSMFSGTLDKCSVCSKTVYPLEKMSLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANRKNATPPPEPAELIDEPPKPEETKEETKEETKEETEEETKEETEEKTETEET 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01530 230 Gene3D Cysteine Rich Protein 5 103 - -
Car03g01530 230 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Car03g01530 230 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Car03g01530 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Car03g01530 230 Gene3D Cysteine Rich Protein 104 171 - -
Car03g01530 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Car03g01530 230 PANTHER OS06G0237300 PROTEIN 1 211 IPR045268 GO:0051015
Car03g01530 230 Pfam LIM domain 10 65 IPR001781 -
Car03g01530 230 Pfam LIM domain 107 162 IPR001781 -
Car03g01530 230 MobiDBLite consensus disorder prediction 192 212 - -
Car03g01530 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Car03g01530 230 MobiDBLite consensus disorder prediction 178 230 - -
Car03g01530 230 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 211 - -
Car03g01530 230 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Car03g01530 230 SMART lim_4 9 61 IPR001781 -
Car03g01530 230 SMART lim_4 106 158 IPR001781 -
Car03g01530 230 MobiDBLite consensus disorder prediction 213 230 - -
Car03g01530 230 Coils Coil 199 230 - -
Car03g01530 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01530 Car-Chr3 60867004 60869984 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Car03g01530 LIM 1.1e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01530 - K09377 gmx:100779513 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01530 03 60867004 60869984 Car07g02725 07 52398072 52400136 PCT