LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g01506	ATGGGTGTTGGTGGTAATTTCTGGGACTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTCGACCTTTCTTTATGGATTGTTCAGCATGAAAATGCTATCAAAACCCATGTCAGAAAACCTCACCTCAGACTCCTTTTCTTCCGTACAATCAATCTCTTCTCCAAGTTTGGAGCGTTTCCTGTGTTTGTTGTTGATGGGACTCCATCGCCGTTGAAATCAAAGGCAAGGATTGCTAGATTTTTCCGGTCTTCTGGAATTGAATCGACTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAAAGGAACAGTTCGTTTTCACGCCGTGTTCAAGAGTGTGTGGAACTTGCTGAGCTACTTGGGATTCCTGTACTCAAAGCTAAAGGAGAAGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATATAGACGCATGCATCACATCTGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTCTCCTAATTCCAAAGAACCGTTCGAATGCTACAGTATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGAAAACACCTAATAGCTATCTCTCTTTTGGTTGGAAATGATTACGATTTGAATGGTGTTCAAGGGATTGGACTTGATAGTGCTCTTCGTTTTGTTCAAGCTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAGTTCCTATCGACATTAAATCTGAGGACAATATGGATATGGATGGAAACTCCCCAAATACTAAACAAACTCACTGCTCATTCTGTGGGCATCCAGGGAACAAAAGAGATCATATGATGAAGTTTTCATGTGAATTTTGTGTCACAAATGACAATAAAGGTTGCCTGCAAAAACCGGAGGGTTTTAAATGCGATTGCTTGTCTTGTGGTATGAATAGGAAACATAAGGAGCAGAAAAAGAATGAAAACTGGCACACAAAAATTTGTCACAAGATTGCGAAGGAGCCAAATTTTCCAAAGGATCAAATCATTGATATGTATTTATGCAATGACAATGGTTACTTTTCTGCAAATGGTGGCCCTCATTTTTTGTGGAAAAGACCAAACATTGAGCTGTTGGTTGAGTTTTTAAACTTCCATCAGAACTGGGATCCTTCGTATGTTCGACGGATAATGTTTCCTATGATGTCCACCATCTTCTTGAGAGAAACGGCTACATCGACAGCAGATAGTTTGTTATTCGGCCAGTTTGAGTTTGATTCTTTACAACGTGTGAAGACGAGATACGGATATCAGTTTTATGTTGTCAAGTGGAAACGTGTGATGGTCAACATTGCCCCTAAAACTTCATCGACTAAATCTGTAATGCAACCAGATGTAATGCAACCAGATGTCAGAGAGCTCGATGAAACGGTGGATCTACTAAATGATTGTGATTTTCCCGAGATTTATGAAGAAGATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTAGCAGCTGCTTTTCCAGAAGAAGTGCAAAGGTTTTGGCAGGAGCAGGAAGTGAAGGATGGGAATCGACAGAAGAATTCAATCTCAATATCTCAAGAAAATGAAAGATCCTCAGTATCACCAAATTCAAGAGGTGTACAGCTAAATATAACTGAGTTCTTCCCAACAACCAAAAGTAAACATAATCCAATACATGAAGAAGAGTCATCATCCAAGAATGTTGATAGCCCAGGCAGTGGAGGCTCAAAAGTGAAGAGGAAAGCATCAAGTTCTAATATTTCGAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG	1851	0.4014	MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSLWIVQHENAIKTHVRKPHLRLLFFRTINLFSKFGAFPVFVVDGTPSPLKSKARIARFFRSSGIESTSLPVPEEGVSAERNSSFSRRVQECVELAELLGIPVLKAKGEAEALCAQLNSEGHIDACITSDSDAFLFGANCIIKCFSPNSKEPFECYSMSDIEAGLGLKRKHLIAISLLVGNDYDLNGVQGIGLDSALRFVQAFSEDDVLNRLHEIGKGNAFQVPIDIKSEDNMDMDGNSPNTKQTHCSFCGHPGNKRDHMMKFSCEFCVTNDNKGCLQKPEGFKCDCLSCGMNRKHKEQKKNENWHTKICHKIAKEPNFPKDQIIDMYLCNDNGYFSANGGPHFLWKRPNIELLVEFLNFHQNWDPSYVRRIMFPMMSTIFLRETATSTADSLLFGQFEFDSLQRVKTRYGYQFYVVKWKRVMVNIAPKTSSTKSVMQPDVMQPDVRELDETVDLLNDCDFPEIYEEDGCSFLLTDENMDLVAAAFPEEVQRFWQEQEVKDGNRQKNSISISQENERSSVSPNSRGVQLNITEFFPTTKSKHNPIHEEESSSKNVDSPGSGGSKVKRKASSSNISKSVRRRLLFD	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g01506	616	Pfam	XPG I-region	131	213	IPR006086	GO:0004518
	Car03g01506	616	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Car03g01506	616	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Car03g01506	616	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Car03g01506	616	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Car03g01506	616	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Car03g01506	616	CDD	PIN_GEN1	2	202	-	-
	Car03g01506	616	MobiDBLite	consensus disorder prediction	585	609	-	-
	Car03g01506	616	Pfam	XPG N-terminal domain	1	89	IPR006085	GO:0004518
	Car03g01506	616	Gene3D	-	3	197	-	-
	Car03g01506	616	Gene3D	-	198	259	-	-
	Car03g01506	616	SMART	xpgineu	128	198	IPR006086	GO:0004518
	Car03g01506	616	MobiDBLite	consensus disorder prediction	535	570	-	-
	Car03g01506	616	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Car03g01506	616	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	603	IPR006084	-
	Car03g01506	616	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	198	414	IPR036279	-
	Car03g01506	616	MobiDBLite	consensus disorder prediction	528	616	-	-
	Car03g01506	616	PANTHER	FLAP ENDONUCLEASE GEN-LIKE 1	1	603	-	-
	Car03g01506	616	SUPERFAMILY	PIN domain-like	6	213	IPR029060	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g01506	16	314	Core DNA Replication Machinery Family	AT5G26680	25.672	4.97e-18	85.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g01506	K15338		-	gmx:100791251	937.562

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car03g01506	03	60617441	60621591	Car03g01506	03	60617441	60621591	ECH