Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01495 ATGAGTTTTAGTGGTTTAATTCTTGACAATAAACTAGATAGTGGTGAAACTGAAAGTTCTAAAATCATAGCTGAAGCAGATATTACTTATAGCAACGGaacaaaccacaacaacaacatcatcagaagaattagcagcaacatcaacactaacaGAATAATAATGCCTTCTGGTGCAATCTCACAACCTCGTTTAGCAACTCCTACTTTGGTTAAATCCATGTACAATTCATCTAGTTTATCTTTAGCACTTAAAACAAACATAGAAGGAGAAGGTGGTGATGTGAATAGATTAATGGCAGAGAATACTCATGAAGCAAATAATAGTTTGAGAAGGAACAGAGAAGAAGAACATGAAAGCAGATCTATTGGAAGTGATAACATAGATGGTTTTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCAAGGAAAAAACGTTATCACCGACACACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCACCCTGATGAAAAGCAAAGACTTGAACTAAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACCCAAATGAAGACACAATTGGAACGACATGAGAATTCACTACTTCGACAAGCAATTGATAAGCTAAGAGCGGAAAACATGTCAATAAGAGAAGCAATAAGGAATCCTATGTGTTCAAATTGTGGAGGAGCATCAATTATTGGTGAAATTTCACTTGAAGAAGAACATCTAAGAATTGAAAATGCAAGATTAAAAGATGAACTAGACAGAGTTTGTGCACTAGCTAGCAAGTTTATGAATCGTCCAATTACTTCATTACCAAACTCAAGTTCAGTACTTGGTAGTAATAATGGAATGAATGATTTTGGAATATTAACAAGTCCTTTAGGAATTGTGTCACAAAATTCAACAAGAACAACAACAAATATGGTAACTAGTAGTAGTAGTAATGGTTTTGATAGATCAATGGAGAGGTCTATGTTACTTGAACTTGCTTTGGCTGCAACGGATGAGTTAATGAAAATGGCTCAAAATAGTGAACCTCTTTGGATTAATAAAAGTTTTGAAGGTGGGAGAGAAATTCTTAATCATGAGGAATATACAAAGATAATTAGTACTCCTAATTGCAAACAAAATGGTTTTGTTTATGAAGCTTCAAGAGAAACTGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAGATCCTCAACAACTGAAGTCATATCTAATGGAATAAATGGAACTAGAAATGGTGCTCTTCAATTGATGCATGGTGAATTACAAGTACTATCTCCATTGGTTCCTGTTCGTGAGGTGAATTTTCTAAGATTTTGTAAGCAGCATGCAGAAGGAGTATGGGCAGTGGTTGATGTGTCCATAGATAGAATGAGAGAAACTTCTTCTGATGCATCCCCCAATTTTCTCAACTGTAGGAAGCTTCCTTCTGGTTGTGTGGTTCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATATGGAGTACGATGAAAGGCAAGTTCATGAGCTGTATCGAGGGTTGTTGAGATCAGGCATGGGGTTTGGTGCACAACGTTGGGTTGCAACCCTCCAACGCCAATGTGAATGTCTAGCCATCCTAATGTCATCAACAACACTACCCTCTACACAACACTCAGCAATAAGCACGGGAGGAAAGCGAAGCATGCTGAAGCTAGCACAAAGAATGACGAACAACTTTTGTGCCGGAGTATGTGCATCAACGGTGCACCAATGGAACAAGTTGAACGTGGGAAATGTAGGTGTGGATGTTAGGGTTATGACACGAAAGAGCATTGATGATCCGGGTGAGCCACCGGGGATTGTGCTAAGTGCAGGAACCTCCGTGTGGCTACCCGCATCACCACAAAGAGTGTTTGATTTCCTCCGCGATGAGAGGCTCAGAAGTGAGTGGGACATACTCTCCAATGGCGGACCCATGCAAGAGATGGCTCACATAGCCAAAGGACATAATCATGGAAATTCTGTGTCTCTCCTACGAGCTAGTGCTAATAATTCAAGCCAGAGTAGCATGTTGATTTTACAAGAGACATGCACAGACGCGTCTGGGTCGCTTGTTGTTTACGCGCCAGTAGACATTCCCGCTATGCATGTTGTAATGAACGGTGGTGACTCAGCTTACGTTGCGCTTCTTCCGTCGGGTTTTGCCGTCTTGCCAGATGGACAATGTCAGGAGAGTAATAATCACGGAGGCGCGTCGCAGCAGAGAGCGAGTGGATCACTTTTGACAGTTGCGTTTCAAATACTTGTTAACAGTCTTCCCACGGCGAAGTTGACGGTGGAATCAGTGGAGACGGTCAATAATCTCATTTCGTGCACTGTTCACAAGATAAAAACTGCACTTCAATGTGAGACTTGA 2484 0.3965 MSFSGLILDNKLDSGETESSKIIAEADITYSNGTNHNNNIIRRISSNINTNRIIMPSGAISQPRLATPTLVKSMYNSSSLSLALKTNIEGEGGDVNRLMAENTHEANNSLRRNREEEHESRSIGSDNIDGFSGDDFDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQAIDKLRAENMSIREAIRNPMCSNCGGASIIGEISLEEEHLRIENARLKDELDRVCALASKFMNRPITSLPNSSSVLGSNNGMNDFGILTSPLGIVSQNSTRTTTNMVTSSSSNGFDRSMERSMLLELALAATDELMKMAQNSEPLWINKSFEGGREILNHEEYTKIISTPNCKQNGFVYEASRETGVVIINSLALVETLMDSNRWSEMFPCVIARSSTTEVISNGINGTRNGALQLMHGELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDRMRETSSDASPNFLNCRKLPSGCVVQDMPNGYSKVTWVEHMEYDERQVHELYRGLLRSGMGFGAQRWVATLQRQCECLAILMSSTTLPSTQHSAISTGGKRSMLKLAQRMTNNFCAGVCASTVHQWNKLNVGNVGVDVRVMTRKSIDDPGEPPGIVLSAGTSVWLPASPQRVFDFLRDERLRSEWDILSNGGPMQEMAHIAKGHNHGNSVSLLRASANNSSQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVLPDGQCQESNNHGGASQQRASGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVHKIKTALQCET 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01495 827 SMART HOX_1 143 206 IPR001356 GO:0003677
Car03g01495 827 CDD START_ArGLABRA2_like 334 564 - -
Car03g01495 827 SMART START_1 339 565 IPR002913 GO:0008289
Car03g01495 827 Pfam Homeodomain 145 200 IPR001356 GO:0003677
Car03g01495 827 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 95 825 - -
Car03g01495 827 Gene3D - 133 215 - -
Car03g01495 827 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 825 IPR042160 -
Car03g01495 827 SUPERFAMILY Bet v1-like 331 565 - -
Car03g01495 827 Coils Coil 208 228 - -
Car03g01495 827 Pfam START domain 339 565 IPR002913 GO:0008289
Car03g01495 827 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Car03g01495 827 MobiDBLite consensus disorder prediction 106 152 - -
Car03g01495 827 Gene3D - 339 562 IPR023393 -
Car03g01495 827 SUPERFAMILY Homeodomain-like 129 202 IPR009057 -
Car03g01495 827 MobiDBLite consensus disorder prediction 107 124 - -
Car03g01495 827 ProSiteProfiles START domain profile. 330 568 IPR002913 GO:0008289
Car03g01495 827 CDD homeodomain 144 202 IPR001356 GO:0003677
Car03g01495 827 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Car03g01495 827 SUPERFAMILY Bet v1-like 587 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01495 Car-Chr3 60471417 60476913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01495 75 827 Homeobox Transcription Factor Family AT3G61150 64.533 0.0 985
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car03g01495 START 3.5e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01495 K09338 - gmx:100783614 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01495 03 60471417 60476913 Car03g01495 03 60471417 60476913 ECH
Car07g02692 07 51796360 51802642 Car03g01495 03 60471417 60476913 ECH