Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01482 atggtgagaggaaaaacacagttgaagcgtatagagaatgcaacaagtagacaagtaacgttttcaaagaggcgtaacggattgctgaagaaggcctttgaactttctgttctttgtgatgctgaagttgctcttatcatcttttctcctagaggaaaactttatgaattttctagctccagCATGCAGGACACAATTGAACGCTACCGTAGAAATAGCAGGAGTGCTCAACCAATGCAAAAATCAGATGAACAAAATATGCAGAATTTGAGGCAAGAAACAGCAAGTTTGATGAAGAAGATTGAACTTCTTGAAGCTTCAAAACGGAAACTAATGGGAGAAGGTTTGGGATCATGCTCCATGGAAGAACTACAACAGATAGAACAACAGTTGGAAAAGAGTGTAAGCACTGTTCGAGCAAGAAAGAATCAGGTTTACAAGAATCAAATTGTGCAACTAAAAGAAAAGGAAAAAGCCCTACTTGTTGAAAATGCCAGGCTCTCTAAACAGGGGATGCAGCCACAGCAAACAACAAAAGATCAAAGAGAAAATCAACCCTATGCTGAAAGAAGTCCAAGCTCAGATGTAGTGACTGAATTGTTCATTGGACTACACAGGTCTTAG 624 0.2821 MVRGKTQLKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQDTIERYRRNSRSAQPMQKSDEQNMQNLRQETASLMKKIELLEASKRKLMGEGLGSCSMEELQQIEQQLEKSVSTVRARKNQVYKNQIVQLKEKEKALLVENARLSKQGMQPQQTTKDQRENQPYAERSPSSDVVTELFIGLHRS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01482 207 Coils Coil 80 107 - -
Car03g01482 207 MobiDBLite consensus disorder prediction 166 196 - -
Car03g01482 207 PANTHER MADS-BOX PROTEIN SOC1 1 204 - -
Car03g01482 207 MobiDBLite consensus disorder prediction 168 192 - -
Car03g01482 207 PANTHER MADS BOX PROTEIN 1 204 - -
Car03g01482 207 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Car03g01482 207 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g01482 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 Coils Coil 143 170 - -
Car03g01482 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Car03g01482 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Car03g01482 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car03g01482 207 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car03g01482 207 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01482 Car-Chr3 60336319 60351316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01482 1 158 MADS-box Gene Family AT2G45660 74.684 3.57e-83 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car03g01482 K-box 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01482 - - gmx:100784678 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01482 03 60336319 60351316 Car03g01482 03 60336319 60351316 ECH