LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g01481	atgggaagagggagagttgagctgaagagaatagagaacaaaatcaaccgtcaagtaacattctcaaaaagaagaaatggtttgttgaagaaagcttatgaactctcagtactatgtgatgctgaaattgcccttatcattttctctagccgtggaaaactctctgaattTGGAAGTTCAACTTCAGGCATTGCCAAAACCCTGGAACGATACCAAAGGTGCTCCTTTACTTCTCAAAATGATAATATTAATGAAAATGAAACTCAGAATTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAATATGAGTCTCTTCAAAAGTCACAAAGGCAATTGCTAGGGGAAGATCTAGGACCACTGAACATGAAAGAGCTACAAAGTCTTGAAAAACAGCTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGTCACAAATTATGATTGAACAAATGGAAGAGCTTAGAAGAAAGGAACGCCATCTTGGAGACATAAATAAGCAACTTAGATTCAAGCTTGAATCAGAAGGATTTAATCTTAAAGCTATTGAAAACATGTGGAGCTCTAATTCTGCTACTGTTTCTGGAGGAAGCAGTTTTCCTTATCAGCCTTCTGAAACCAATCCTATGGACTGCCAAGCTGAACCTTTCTTACAAATAGGGTACCATCAATATGTTCAAGCAGAACCATCCAATGCTCCAAAGAGCATGGTTGGTGAGACTAGCTTTATCCATGGATGGATCCTTTGA	747	0.3039	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFGSSTSGIAKTLERYQRCSFTSQNDNINENETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNMKELQSLEKQLEGALAQARQRKSQIMIEQMEELRRKERHLGDINKQLRFKLESEGFNLKAIENMWSSNSATVSGGSSFPYQPSETNPMDCQAEPFLQIGYHQYVQAEPSNAPKSMVGETSFIHGWIL	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g01481	248	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	234	-	-
	Car03g01481	248	PANTHER	MADS BOX PROTEIN	1	234	-	-
	Car03g01481	248	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Car03g01481	248	Pfam	K-box region	84	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Car03g01481	248	Coils	Coil	95	115	-	-
	Car03g01481	248	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Car03g01481	248	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	Gene3D	-	13	112	IPR036879	GO:0003677\|GO:0046983
	Car03g01481	248	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Car03g01481	248	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Car03g01481	248	Coils	Coil	122	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g01481	Car-Chr3	60324628	60331143	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g01481	1	248	MADS-box Gene Family	AT2G45650	63.386	5.14e-114	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Car03g01481		K-box	7.1e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g01481	K09264		-	tcc:18614251	370.163

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car03g01481	03	60324628	60331143	Car03g01481	03	60324628	60331143	ECH
	Car07g02659	07	51096908	51103782	Car03g01481	03	60324628	60331143	ECH
	Car07g01179	07	10568079	10576899	Car03g01481	03	60324628	60331143	ECH