Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01471 ATGAGTTTCTTGCAGGGAATAATCGATTCCTTTAACTCTGTTTTCTCTCCGCATAACGAATCTTCTTCTTCTCAAACCAATTCACCAATGGAAGTTTCTCCTGcttcttcttcttcttcttcttcttcttcttcttcttctGTTTCGAACGAACGCGTTGCTTACAAGCTCAAAGGATACTTCGATTTGGCCACACAAGAGATCGATAAGGCTGTTAGGGCTGAAGAGTGGGGTTTGATCGATGACGCTATTCTTCACTACAGGAATGCTCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTCATCACTTCCACTGAACAACAGAAGGTAAAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTTTCTGAAAGATTGCAGACTCTCAATAGACGAGCAGGTAGTGCAGTTGCCAATCAGAGCACCTCAAGCCTTGCACAAACTGCTGCAATTCCAACTAAACTATCAAATACTACGAAAAAAGTGACACAAAAGTATCCTAAAAAAAAAGATGAGGTGAATAAAGTTCAAAGCCCGAAATCTAATCAAACATCTGGTGCAAATTACGACACAAAATTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTTAGATGGGACGATGTTGGTGGTCTTGAAAAAGCAAAGCAAGCGTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAAAGGTTTACTTCTCTTTGGTCCGCCTGGTAATGGCAAGACCATGCTTGCCAAAGCAGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACGTCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTACGGACACTATTCATGGTAGCTATATCGAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGATGGCAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAGCTGGATGATGCAGTTCTTAGGAGACTGGTTAAGAGAATATACATACCTTTACCAAATGAAAATGTTAGGAAACTTCTGCTAAAACATAAACTCAAGGGTCAAGCGTTCTCTTTACCTAGTAGAGATCTAGAAATGCTTGTAAACGAGACTGAAGGATACTCTGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTAAGGTATGAGGACTTCAAGAAAGCAATGGCTGTCATAAGACCAAGTTTAAACAAAAGCAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAGTTTGGCTCAAATTAA 1467 0.394 MSFLQGIIDSFNSVFSPHNESSSSQTNSPMEVSPASSSSSSSSSSSSVSNERVAYKLKGYFDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITSTEQQKVKSYRQKISKWQGQVSERLQTLNRRAGSAVANQSTSSLAQTAAIPTKLSNTTKKVTQKYPKKKDEVNKVQSPKSNQTSGANYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPAKGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRMANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVNETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01471 488 SMART smart 57 134 IPR007330 -
Car03g01471 488 CDD MIT_spastin 57 135 - -
Car03g01471 488 Pfam Vps4 C terminal oligomerisation domain 454 486 IPR015415 -
Car03g01471 488 ProSitePatterns AAA-protein family signature. 355 374 IPR003960 GO:0005524|GO:0016887
Car03g01471 488 PANTHER AAA DOMAIN-CONTAINING 4 488 - -
Car03g01471 488 Gene3D - 49 139 - -
Car03g01471 488 MobiDBLite consensus disorder prediction 165 194 - -
Car03g01471 488 Pfam ATPase family associated with various cellular activities (AAA) 253 383 IPR003959 GO:0005524|GO:0016887
Car03g01471 488 Gene3D - 384 466 - -
Car03g01471 488 Gene3D - 212 482 IPR027417 -
Car03g01471 488 PANTHER BNAC04G50250D PROTEIN 4 488 - -
Car03g01471 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 485 IPR027417 -
Car03g01471 488 CDD AAA 238 383 - -
Car03g01471 488 Pfam AAA+ lid domain 408 439 IPR041569 -
Car03g01471 488 MobiDBLite consensus disorder prediction 18 47 - -
Car03g01471 488 SMART AAA_5 249 385 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01471 Car-Chr3 60132620 60137392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01471 194 438 Calmodulin-binding Proteins AT3G56690 40.945 1.66e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01471 K13254 - gmx:100780946 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01471 03 60132620 60137392 Car03g01471 03 60132620 60137392 ECH