Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car03g01435 | ATGGAAGGGAGCGGGGACATATTCAGAGCTTCTCCGGTAGCCGGAGCATCATCGCCGTCTTCTTTGTCATCAAATTCGAGAAGATACGGATTCCCTTCAGCAGCCAGCATAATCCAGGCACCGTTATCGGTGCTTCTAGAATATTCAGGTATTCTTCCCGCGAGGTCTAACCAGCACCAACCTAGCACCGATGCTGTCCCCAACGACAGCGAGGTTTCAATTAGGATAATCGGTTCGACAGAGCAGGATAATCACAGGGAAGAACAGACTCCTCTGGTGGTGGGGAATGACGGTGCTTCTGCAGGTGCAGCTGGGATGACGTCTTCTCCTTCACAGGGTGATGTTGAGGGCGTTTTGCGGACGGGGAGTGGAAGTATTGATGCAGAAGCAggtggtggtggtgatggtgttggtgCCAATGGGAGGGATTCATCTTACCAGAGATATGATATTCAACATGCTGCTAGGTGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTTGTTTTCATTCGCCAGCATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACGTTCTGCGGAAACAAACAGCATTGAAGGGAGAGAGAAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTTGCTGGTGTTTATTGGTGGTATCAAAATGATGATCTAATGAATCCGTTAGTCATGCTTCCTCCCAAAGAAATACCACCTTTCTGGCATGCTATTTTCGTCATCATGGTGAATGATACTTTGGCGCGCCAGGCAGCAATGATTTTCAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTACCGTAAGCAGGGGCAATTGCTGACTTTAGTTGAGTACTTCCTCCTGCTTTACCGAGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGGTTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTGCAGTAAAGGCATTGTCACGTAAAGAAGTACACTATGGGGCTTATGCAACATCCGAGCAGGTCATTGCAGCGGGTGATCTTTGTGCCATTTGTCAAGAGAAGATGCATGCCCCAGTCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCGTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGGTCTACTAGTTTGTTTTTCCAGTTATTCTGA | 1323 | 0.4444 | MEGSGDIFRASPVAGASSPSSLSSNSRRYGFPSAASIIQAPLSVLLEYSGILPARSNQHQPSTDAVPNDSEVSIRIIGSTEQDNHREEQTPLVVGNDGASAGAAGMTSSPSQGDVEGVLRTGSGSIDAEAGGGGDGVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDVLRKQTALKGERKMPVLIGISVAFALHVAGVYWWYQNDDLMNPLVMLPPKEIPPFWHAIFVIMVNDTLARQAAMIFKCILLMYYKNSRGRNYRKQGQLLTLVEYFLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF | 440 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car03g01435 | 440 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 354 | 427 | IPR013083 | - | |
Car03g01435 | 440 | SMART | ring_2 | 379 | 416 | IPR001841 | - | |
Car03g01435 | 440 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Car03g01435 | 440 | MobiDBLite | consensus disorder prediction | 79 | 139 | - | - | |
Car03g01435 | 440 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 15 | 440 | IPR044235 | GO:0061630|GO:1904294 | |
Car03g01435 | 440 | Pfam | Zinc finger, C3HC4 type (RING finger) | 377 | 420 | - | - | |
Car03g01435 | 440 | ProSitePatterns | Zinc finger RING-type signature. | 394 | 403 | IPR017907 | - | |
Car03g01435 | 440 | MobiDBLite | consensus disorder prediction | 102 | 118 | - | - | |
Car03g01435 | 440 | CDD | RING-HC_RNFT1_like | 378 | 417 | - | - | |
Car03g01435 | 440 | SUPERFAMILY | RING/U-box | 370 | 422 | - | - | |
Car03g01435 | 440 | ProSiteProfiles | Zinc finger RING-type profile. | 379 | 417 | IPR001841 | - | |
Car03g01435 | 440 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 15 | 440 | - | - | |
Car03g01435 | 440 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car03g01435 | Car-Chr3 | 59665008 | 59670380 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car03g01435 | 3 | 440 | C3H Transcription Factor Family | AT5G01960 | 69.595 | 0.0 | 622 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car03g01435 | - | K22379 | gmx:100818546 | 659.448 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car03g01435 | 03 | 59665008 | 59670380 | Car03g01435 | 03 | 59665008 | 59670380 | ECH |