Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01435 ATGGAAGGGAGCGGGGACATATTCAGAGCTTCTCCGGTAGCCGGAGCATCATCGCCGTCTTCTTTGTCATCAAATTCGAGAAGATACGGATTCCCTTCAGCAGCCAGCATAATCCAGGCACCGTTATCGGTGCTTCTAGAATATTCAGGTATTCTTCCCGCGAGGTCTAACCAGCACCAACCTAGCACCGATGCTGTCCCCAACGACAGCGAGGTTTCAATTAGGATAATCGGTTCGACAGAGCAGGATAATCACAGGGAAGAACAGACTCCTCTGGTGGTGGGGAATGACGGTGCTTCTGCAGGTGCAGCTGGGATGACGTCTTCTCCTTCACAGGGTGATGTTGAGGGCGTTTTGCGGACGGGGAGTGGAAGTATTGATGCAGAAGCAggtggtggtggtgatggtgttggtgCCAATGGGAGGGATTCATCTTACCAGAGATATGATATTCAACATGCTGCTAGGTGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTTGTTTTCATTCGCCAGCATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACGTTCTGCGGAAACAAACAGCATTGAAGGGAGAGAGAAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTTGCTGGTGTTTATTGGTGGTATCAAAATGATGATCTAATGAATCCGTTAGTCATGCTTCCTCCCAAAGAAATACCACCTTTCTGGCATGCTATTTTCGTCATCATGGTGAATGATACTTTGGCGCGCCAGGCAGCAATGATTTTCAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTACCGTAAGCAGGGGCAATTGCTGACTTTAGTTGAGTACTTCCTCCTGCTTTACCGAGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGGTTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTGCAGTAAAGGCATTGTCACGTAAAGAAGTACACTATGGGGCTTATGCAACATCCGAGCAGGTCATTGCAGCGGGTGATCTTTGTGCCATTTGTCAAGAGAAGATGCATGCCCCAGTCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCGTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGGTCTACTAGTTTGTTTTTCCAGTTATTCTGA 1323 0.4444 MEGSGDIFRASPVAGASSPSSLSSNSRRYGFPSAASIIQAPLSVLLEYSGILPARSNQHQPSTDAVPNDSEVSIRIIGSTEQDNHREEQTPLVVGNDGASAGAAGMTSSPSQGDVEGVLRTGSGSIDAEAGGGGDGVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDVLRKQTALKGERKMPVLIGISVAFALHVAGVYWWYQNDDLMNPLVMLPPKEIPPFWHAIFVIMVNDTLARQAAMIFKCILLMYYKNSRGRNYRKQGQLLTLVEYFLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01435 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 427 IPR013083 -
Car03g01435 440 SMART ring_2 379 416 IPR001841 -
Car03g01435 440 MobiDBLite consensus disorder prediction 1 28 - -
Car03g01435 440 MobiDBLite consensus disorder prediction 79 139 - -
Car03g01435 440 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 15 440 IPR044235 GO:0061630|GO:1904294
Car03g01435 440 Pfam Zinc finger, C3HC4 type (RING finger) 377 420 - -
Car03g01435 440 ProSitePatterns Zinc finger RING-type signature. 394 403 IPR017907 -
Car03g01435 440 MobiDBLite consensus disorder prediction 102 118 - -
Car03g01435 440 CDD RING-HC_RNFT1_like 378 417 - -
Car03g01435 440 SUPERFAMILY RING/U-box 370 422 - -
Car03g01435 440 ProSiteProfiles Zinc finger RING-type profile. 379 417 IPR001841 -
Car03g01435 440 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 440 - -
Car03g01435 440 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01435 Car-Chr3 59665008 59670380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01435 3 440 C3H Transcription Factor Family AT5G01960 69.595 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01435 - K22379 gmx:100818546 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01435 03 59665008 59670380 Car03g01435 03 59665008 59670380 ECH