Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01400 ATGAGCAATCAACATTTTGTGATGTGTTCCACTCAAAGGAACCTGGTTGGAGACCGTGCTCTTTATGTGGCAAGCGTTTCCATTGTGGCTGAATTGCCTCTCAATCACTACTTAAGTTGCGAGTGCAAGGAATTAACAATGACTGTTTCACAGTTTTCAAGCACTAAAAAGGGTGAGAGTTCAATTTCCCCTGCTATTGAAGAACTTGGAAGCAATTATGAATCATCTGAGCCAACAAAATCAGATATGAAAGTGAAAGATGCATATGAATCATTGAGTATGTCCCCTATTGCCCCTCCTTTTGGAAATTCAATTTCCTATGGTGAAAAGGAACAAAGTAAAAGTTCAAAGTCAGAGAAAAATGTGATCATGGCATCACCAATTCAAGTTGCAAGTCCCTTATCAGCTATAAGAAGACCAAAAAATCACATATATCCCCGTTATTTGCCTAAGATTACTCATCAAGAATTACAGCAATTATCTGGACAATTAAAATGTACCATTGTGCCACTATTTGAGAAGACACTAACTATAAGTGATGTTGGTCGACTTGGTCGCATGGTTCTTCCAAAACCATGTGTTGAAACATATTTTCCTCCTATTTCACAACCAGAGGGCATTCCGTTACAAATTGAAGATGTGAAAGGGAATAAATTGGTGTTTCGATTTAGATTTTGGCCAAATAATAGCAGCAGGATTTATCTATTAGAAGGTGTAAATCCTTGGATTCGATCTATGCAATTGCAAGCTGGAGATTTTGTGACATTTAGCCGGATGGAACCTGGGGAGAAACTCATAATGTGGTTTCGAAAGGCTTCAATTTCTTCTGATCAGTCACTAAAGGAAAGTGAAGAAACCACCCTAAATGTGGTGCCTGAAAATGTTGCTTCAGCTAGTGATGATGATATGAGTTTGCATGACTTTACTGTGTCTAAAGGCTTGAAAAGAGGTCTGCCACAACAAGAGCTAGTTGCTCATGAGAAGAAAAGAGCATCTGACATTGATTCAAAAAGTAAGAGGCTGCAGCTTATTGATAACCAAGATCCATTGATGCTGAAACTTACTTGGGAAGAGGTTCAGGGTTTTCTTCAACCATCCCCAACAGTTATCCCAAACATTGTGGTCATTGATGATCATGTTTTTGAAGAATATGATGAACCTCCTATCATAGCAAAGAAGGGTATATTCATAAATAGGATGAATGAGCAATGGATACAGTGTGATATGTGCTCAGAATGGAAGAAGTTAGAAGGATGTGTGGAGAATTTATGTGATCAAACAAGGTGTTCATGCTCAGCTTCCATGAATTGA 1311 0.3837 MSNQHFVMCSTQRNLVGDRALYVASVSIVAELPLNHYLSCECKELTMTVSQFSSTKKGESSISPAIEELGSNYESSEPTKSDMKVKDAYESLSMSPIAPPFGNSISYGEKEQSKSSKSEKNVIMASPIQVASPLSAIRRPKNHIYPRYLPKITHQELQQLSGQLKCTIVPLFEKTLTISDVGRLGRMVLPKPCVETYFPPISQPEGIPLQIEDVKGNKLVFRFRFWPNNSSRIYLLEGVNPWIRSMQLQAGDFVTFSRMEPGEKLIMWFRKASISSDQSLKESEETTLNVVPENVASASDDDMSLHDFTVSKGLKRGLPQQELVAHEKKRASDIDSKSKRLQLIDNQDPLMLKLTWEEVQGFLQPSPTVIPNIVVIDDHVFEEYDEPPIIAKKGIFINRMNEQWIQCDMCSEWKKLEGCVENLCDQTRCSCSASMN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01400 436 ProSiteProfiles B3 DNA-binding domain profile. 172 272 IPR003340 GO:0003677
Car03g01400 436 Gene3D - 150 276 IPR015300 -
Car03g01400 436 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 105 434 - -
Car03g01400 436 MobiDBLite consensus disorder prediction 60 82 - -
Car03g01400 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 105 434 - -
Car03g01400 436 CDD B3_DNA 170 271 IPR003340 GO:0003677
Car03g01400 436 Pfam B3 DNA binding domain 172 271 IPR003340 GO:0003677
Car03g01400 436 MobiDBLite consensus disorder prediction 60 78 - -
Car03g01400 436 SUPERFAMILY DNA-binding pseudobarrel domain 169 273 IPR015300 -
Car03g01400 436 SMART B3_2 172 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01400 Car-Chr3 59269503 59274642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01400 124 433 B3 DNA Binding Superfamily AT4G32010 49.074 6.44e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car03g01400 B3 5.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01400 - - cam:101496174 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01400 03 59269503 59274642 Car03g01400 03 59269503 59274642 ECH